Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYB183
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35550 174 / 2e-53 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G14750 171 / 5e-53 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G40330 168 / 1e-51 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT2G47460 172 / 2e-51 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT5G49330 170 / 6e-51 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT3G23250 167 / 1e-50 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G13540 166 / 2e-50 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G09460 165 / 3e-50 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 165 / 5e-50 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT5G52600 162 / 1e-49 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221800 [exp] 195 / 2e-61 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.006G275900 [exp] 196 / 3e-61 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.018G049401 [exp] 186 / 7e-58 AT2G16720 190 / 4e-59 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049600 [exp] 186 / 1e-57 AT2G16720 192 / 4e-60 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144300 [exp] 184 / 2e-57 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.018G005300 [exp] 187 / 5e-57 AT1G22640 186 / 9e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.003G144200 [exp] 181 / 1e-55 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.018G049200 [exp] 182 / 2e-54 AT2G16720 189 / 8e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.001G086700 [exp] 176 / 3e-54 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033438 [exp] 186 / 2e-57 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 186 / 2e-57 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10039173 [exp] 173 / 5e-53 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 168 / 6e-51 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10033889 [exp] 166 / 1e-49 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10016855 [exp] 164 / 5e-49 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10009448 [exp] 163 / 5e-49 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10010273 [exp] 164 / 1e-48 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 163 / 1e-48 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10001548 [exp] 161 / 3e-48 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G221500.1 pacid=42767412 polypeptide=Potri.006G221500.1.p locus=Potri.006G221500 ID=Potri.006G221500.1.v4.1 annot-version=v4.1 ATGGGTAGAAGTCCTACAGGGGGGATAATTAGAGGAACTTGGACTGCTACTGAAGACAAAATTCTTACAGCATATGTTAGAAATTATGGTGAAGGGAACT GGGCTAGGGTTCCAAAGGAAACAGGTCTGAAGAGATGTGGCAAGAGTTGCAGGCTTCGTTGGCTGAATTATCTAAAACCAGATGTTAAAAGAGGAAACAT TAGCCCAGATGAAGAAGATCTCATTATTAGGCTTCACAAGCTCTTAGGCAACAGATGGGCTTTAATAGCTGGAAGGATTCCAGGTCGGACGGACAATGAG ATCAAGAATTACTGGAATTCAACCTTGAAAAGAAAGGTACAAGCTAACGATCAAAAACAGCCTAGAAGAGGGAATAAAGACACAAAAAAACAAACCAGAA AGACCTCAACAGGATTGAATAAGGCGGCACCATGCACAAACAGTAGTCTTCCTTCACCACCAGTCTTGGCTGAAAATATAGAGACTGATCAGATTCTCAC AGCATCCTCCATTGAAGAAGGAACCTTGGAAAAATATCTGATAGAAAATCCCAACTCAAATGATGAGCTCTTGCTATTTACTAACGATAATGATGTGCCT TGCAACTTCTTGATGGATCTTGATATGGGGCAGATGAGCTTCTCTGATTTTCTCCAAACTGATATCTTCTCAGATAGCAATAACATGCTTGTTAATGGGC CTGCACCTTCTTATCCAGATGAAGCTTCTTTGTTCCCCGAGGCTATGCTGCAGAATTGGATATGTGAGGATGGCTTTGAACTTGAACTGGCTATGGGTCC TTGA
AA sequence Show only first row Show all	>Potri.006G221500.1 pacid=42767412 polypeptide=Potri.006G221500.1.p locus=Potri.006G221500 ID=Potri.006G221500.1.v4.1 annot-version=v4.1 MGRSPTGGIIRGTWTATEDKILTAYVRNYGEGNWARVPKETGLKRCGKSCRLRWLNYLKPDVKRGNISPDEEDLIIRLHKLLGNRWALIAGRIPGRTDNE IKNYWNSTLKRKVQANDQKQPRRGNKDTKKQTRKTSTGLNKAAPCTNSSLPSPPVLAENIETDQILTASSIEEGTLEKYLIENPNSNDELLLFTNDNDVP CNFLMDLDMGQMSFSDFLQTDIFSDSNNMLVNGPAPSYPDEASLFPEAMLQNWICEDGFELELAMGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	0	1	MYB183
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126500 [exp]	1.73	0.8666
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	6.00	0.8628
AT4G27870			Vacuolar iron transporter (VIT...		Potri.001G127900 [exp]	7.21	0.8480
AT1G45688			unknown protein		Potri.007G045000 [exp]	8.48	0.8419
					Potri.001G388300 [exp]	8.48	0.8331
					Potri.009G152101 [exp]	8.77	0.8391
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.006G272700 [exp]	10.90	0.8124
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137600 [exp]	11.22	0.8118
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.015G067400 [exp]	13.19	0.7541
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	14.14	0.7999

Compare expression of checked genes

Potri.006G221500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.