Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56840 167 / 2e-51 MYB myb-like transcription factor family protein (.1) AT5G47390 149 / 4e-43 MYB myb-like transcription factor family protein (.1) AT5G61620 144 / 2e-41 MYB myb-like transcription factor family protein (.1) AT1G70000 127 / 7e-36 MYB myb-like transcription factor family protein (.1.2) AT3G16350 125 / 6e-34 MYB Homeodomain-like superfamily protein (.1) AT5G58900 122 / 2e-33 MYB Homeodomain-like transcriptional regulator (.1) AT5G08520 119 / 4e-32 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 118 / 1e-31 MYB Duplicated homeodomain-like superfamily protein (.1) AT2G38090 117 / 1e-31 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT3G11280 115 / 5e-31 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150300 [exp] 174 / 2e-53 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 146 / 3e-42 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 145 / 7e-42 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 146 / 8e-42 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 144 / 7e-41 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G080300 [exp] 137 / 7e-39 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.008G191800 [exp] 133 / 1e-37 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 130 / 2e-36 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.012G060300 [exp] 120 / 8e-33 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037560 [exp] 155 / 4e-45 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10040181 [exp] 143 / 8e-41 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 142 / 1e-40 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10013289 [exp] 140 / 3e-40 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10038279 [exp] 140 / 1e-39 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10006826 [exp] 137 / 9e-39 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 131 / 5e-36 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10030813 [exp] 126 / 7e-35 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10040696 [exp] 121 / 8e-33 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 121 / 1e-32 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G230500.1 pacid=42767552 polypeptide=Potri.006G230500.1.p locus=Potri.006G230500 ID=Potri.006G230500.1.v4.1 annot-version=v4.1 ATGGGCAGGAAATGCTCACATTGTGGGAACGTAGGGCATAACTCAAGGACTTGCACAACTACTCAAAAAGAAAGTTTAAGGCTCTTTGGCGTGCAGCTGG ACATACCAGCTTCGTCATCTTCTCCTGCTATGAAGAAGAGTTTTAGTGTGGGTAGCTTGCCATCTTCATCAACCACGCCTTCTTCTTCTACGTCATCCAA TTCACCGCAGGTTAACACAGGCGACGAATTTTATCTCCTCTCCAATGGATATCTCTCTGATGGCCAAGTAGGGCGTACTCCAGAAAGGAAGAAGAGTGTG CCGTGGACCGAAGAGGAGCACCGGATCTTTCTACTAGGCCTCGAGAAGCTCGGCAAGGGTGACTGGAGGGGTATCTCAAGAAACTTTGTGACCACAAGAA CTCCGACCCAAGTAGCCAGTCACGCACAGAAATATTTTCTTAGGCAAAACAGTCTCACTAAAAGAAAACGACGCCCTAGTCTCTTCGACGTTGGGAATGG TACTAGCTCAATCCAACCAGCCAGTGCTAGCATTCCTGAGGTTATAATTGAAGGCAACATCTTTGGAGGGTTACCATTGATGAGCACAGTAGCTTCTCCA ATTTGCACTAGTTTTTCTGAGTTGGGTTTAGGTGATCATCATTCTGTATTGCTTCCATGTTCAAGTCCTGATGAACATGTCAGCTCCAAAACTTCTAGCA CTCCTGCTCCCAGCAAAGCCTAG
AA sequence Show only first row Show all	>Potri.006G230500.1 pacid=42767552 polypeptide=Potri.006G230500.1.p locus=Potri.006G230500 ID=Potri.006G230500.1.v4.1 annot-version=v4.1 MGRKCSHCGNVGHNSRTCTTTQKESLRLFGVQLDIPASSSSPAMKKSFSVGSLPSSSTTPSSSTSSNSPQVNTGDEFYLLSNGYLSDGQVGRTPERKKSV PWTEEEHRIFLLGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRQNSLTKRKRRPSLFDVGNGTSSIQPASASIPEVIIEGNIFGGLPLMSTVASP ICTSFSELGLGDHHSVLLPCSSPDEHVSSKTSSTPAPSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56840	MYB		myb-like transcription factor ...		Potri.006G230500 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019600 [exp]	7.93	0.7254
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019700 [exp]	9.16	0.7182
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.008G072400 [exp]	26.92	0.6880
AT1G47670			Transmembrane amino acid trans...		Potri.002G012900 [exp]	27.42	0.7246	PTRLHT10
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411000 [exp]	28.54	0.7208
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	31.65	0.7191
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136303 [exp]	37.49	0.6609
AT3G57390	MADS	AGL18	AGAMOUS-like 18 (.1.2)		Potri.006G048700 [exp]	38.98	0.7113	AGL15.2
AT2G24600			Ankyrin repeat family protein ...		Potri.014G050532 [exp]	39.45	0.7140
					Potri.003G153266 [exp]	42.56	0.7087

Compare expression of checked genes

Potri.006G230500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.