Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25950 333 / 7e-112 Protein of Unknown Function (DUF239) (.1) AT5G25960 298 / 3e-99 Protein of Unknown Function (DUF239) (.1) AT2G44220 272 / 2e-88 Protein of Unknown Function (DUF239) (.1) AT2G44210 260 / 2e-83 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44240 259 / 3e-83 Protein of Unknown Function (DUF239) (.1) AT1G55360 247 / 2e-78 Protein of Unknown Function (DUF239) (.1) AT3G13510 244 / 2e-77 Protein of Unknown Function (DUF239) (.1) AT5G56530 241 / 4e-76 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G17750 230 / 4e-72 NIP1 NEP-interacting protein 1 (.1) AT1G10750 227 / 6e-70 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233600 [exp] 315 / 8e-105 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 264 / 1e-84 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 248 / 2e-78 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 244 / 5e-77 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 243 / 1e-76 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 240 / 9e-76 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 233 / 1e-72 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 229 / 7e-71 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 219 / 7e-67 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007458 [exp] 295 / 3e-97 AT2G44210 266 / 2e-85 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Lus10013410 [exp] 248 / 1e-78 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 242 / 4e-76 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 224 / 3e-69 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 221 / 1e-67 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 221 / 2e-67 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 215 / 4e-65 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 205 / 3e-62 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 203 / 8e-62 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 201 / 1e-60 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [poplar] [flax] Neprosin Neprosin PF14365 [poplar] [flax] Neprosin_AP Neprosin activation peptide
Representative CDS sequence Show only first row Show all	>Potri.006G233700.2 pacid=42769706 polypeptide=Potri.006G233700.2.p locus=Potri.006G233700 ID=Potri.006G233700.2.v4.1 annot-version=v4.1 ATGTATTGCCACTTGGTATTGTTCTTGCAGAGTGAAGATGGAGATATTATTGCTTGTGTTGATATCTACAAGCAACCTGCTTTTGATCATCCTGCTCTGA AAAACCATACTATTCAGATGCAACCCAGTTTTATTCCTTCAACAGAGACTCCAAATGGAGAACGCGAGAATTCTCGGCCAGTTGTGTCTCAACTTTGGAA AAAAAGAGGTAGTTGTCCAAAGGGAACTATTCCTATCCGCAGAATCCGAAGGCGGGAGTTATTGAGAACTAATGGGAGAAAGAGCCCTGAACATCTCAAA GGGACAAAAAAAATAGCCACTCAGGATCGCTTTATGCACCTCAACAACACCAAAGGCTCAATTCTTTATCCTACTCCAGAAAATCGTTCTACCGCAATCC TTTTGACATATGGATACAATTATGTTGGAGCCAGTGGAGAAATAAATGTCTGGAACCCACATGTTGAAAGGTTACCTGAATTCACTACTGCTCAAATCTG GCTTAAGAGTGGTGCAGTGAACAATTTTGAAAGCGTGGAAGCAGGATGGACGGTACACCCTGCAGAATATAGTGATGCACGGACTAGATTTTTTGTGTAC TGGACTGTTGATGGATACAAGAAAACAGGTTGCTTTGACCTTACTTGTTATGGATTCGTGCAAACTAGCACCGAAATTGCTCTTGGTGGAGCTGTTGAGC CCGGTTCTAGTTCATTTCAACAACAGTATGTTCTCCCAATCAACATCTTCATGGATCCAACCACAACCAATTGGTGGCTGGTATTTCACAACATTGCTGT TGGATACTGGCCTGGAAGTCTCTTCTCTTTGCTAAAACACAGTGCCACATCTGTTGAATGGGGAGGACAAGTTTATAGTGTTAATGTCAGGAAAACTCCC CACACAAAGACAGCCATGGGAAGTGGATATGACGCGGAGGAATTGTATGGTTTTGCATGTTTCATTGGACAGCCAAGGATTCTGGATTATTCTAAGTCAT ACAAGTACCCTACCTTTGTTGCCGTTTGGAAAGACGAATATAATTGCTACTCTGCAGTTAATTACAAAGCAGGGAATGCAAATGATGAAGCTACATTTTT CTTCGGAGGGCCAGGTCAAAGCTATCGTTGTCCATGA
AA sequence Show only first row Show all	>Potri.006G233700.2 pacid=42769706 polypeptide=Potri.006G233700.2.p locus=Potri.006G233700 ID=Potri.006G233700.2.v4.1 annot-version=v4.1 MYCHLVLFLQSEDGDIIACVDIYKQPAFDHPALKNHTIQMQPSFIPSTETPNGERENSRPVVSQLWKKRGSCPKGTIPIRRIRRRELLRTNGRKSPEHLK GTKKIATQDRFMHLNNTKGSILYPTPENRSTAILLTYGYNYVGASGEINVWNPHVERLPEFTTAQIWLKSGAVNNFESVEAGWTVHPAEYSDARTRFFVY WTVDGYKKTGCFDLTCYGFVQTSTEIALGGAVEPGSSSFQQQYVLPINIFMDPTTTNWWLVFHNIAVGYWPGSLFSLLKHSATSVEWGGQVYSVNVRKTP HTKTAMGSGYDAEELYGFACFIGQPRILDYSKSYKYPTFVAVWKDEYNCYSAVNYKAGNANDEATFFFGGPGQSYRCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25950			Protein of Unknown Function (D...		Potri.006G233700 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Potri.014G090900 [exp]	5.56	0.8798
					Potri.018G003201 [exp]	10.77	0.8627
					Potri.010G212850 [exp]	12.64	0.8589
AT4G24700			unknown protein		Potri.012G086000 [exp]	14.89	0.8653
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	15.87	0.8537
					Potri.014G018801 [exp]	16.73	0.8490
					Potri.004G063101 [exp]	16.97	0.8537
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	20.34	0.8632
					Potri.008G224228 [exp]	22.44	0.8473
					Potri.008G224246 [exp]	23.36	0.8462

Compare expression of checked genes

Potri.006G233700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.