Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49690 231 / 1e-74 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G65790 230 / 2e-73 MYB AtMYB68 myb domain protein 68 (.1) AT5G57620 225 / 5e-72 MYB ATMYB36 myb domain protein 36 (.1) AT2G36890 223 / 1e-71 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT4G37780 220 / 2e-70 MYB ATMYB87 myb domain protein 87 (.1) AT5G23000 211 / 2e-66 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT5G56110 187 / 3e-57 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT3G23250 174 / 2e-52 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G22640 172 / 2e-52 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT5G16770 174 / 4e-52 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058800 [exp] 363 / 2e-127 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.002G113700 [exp] 236 / 4e-76 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 236 / 6e-76 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.016G099200 [exp] 230 / 4e-74 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.006G170800 [exp] 231 / 5e-74 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G095900 [exp] 230 / 2e-73 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.009G007100 [exp] 228 / 4e-73 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 228 / 4e-73 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 227 / 8e-73 AT5G57620 233 / 9e-75 myb domain protein 36 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001316 [exp] 236 / 3e-76 AT5G57620 280 / 2e-93 myb domain protein 36 (.1) Lus10006978 [exp] 235 / 3e-76 AT5G57620 286 / 6e-96 myb domain protein 36 (.1) Lus10007248 [exp] 235 / 2e-75 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 234 / 3e-75 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10011606 [exp] 232 / 4e-74 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 231 / 6e-74 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10013830 [exp] 228 / 5e-73 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10016139 [exp] 226 / 3e-72 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10026543 [exp] 225 / 8e-72 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10021428 [exp] 223 / 3e-71 AT5G57620 248 / 2e-80 myb domain protein 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G234200.1 pacid=42770560 polypeptide=Potri.006G234200.1.p locus=Potri.006G234200 ID=Potri.006G234200.1.v4.1 annot-version=v4.1 ATGGGGAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAAAGAGGACCATGGTCTCCTGAGGAAGATGCCACTCTCAAAAGCTACCTTGAGACTCATGGCA CTGGTGGTAACTGGATTGCTTTGCCTCAAAAAGCTGGCCTTAAGCGATGCGGCAAGAGCTGCCGGTTACGATGGCTTAATTATCTCAGACCAGACATCAA ACATGGAGGCTTTACTGAAGAAGAAGACAACATCATATGCACTCTCTATAGTCAAATGGGAAGCAGATGGTCTCTCATAGCTGCTCAACTGCCTGGAAGA ACTGACAACGATGTGAAAAATTACTGGAACACCAAATTGAAAAAGAAGATTCTTGCGGGAAAAATAAGCCTCACAATCAAGAACAACCCTATCAATGCCC CCGTTAACGTTGCTAATATTCCTGCCATTCCCTGCTCAACATCTCCTATTCTTTATGTCCCTAAAGCTGAAACCGAAAGTTCTGTCACCTTCTCCGATCA TTATTCATTAACTCAAATTTCAGGAACATTGCCTGCCTTATCTGATATTGGTTATGAACCTATTATCAATAGCACTGCCCAGAACTTGAGTCCAAACCAA TTCCAATTTTCTAGTTTCCCTGGGGTCATTGACATGTCTGAATTTTCAATGAACAGTACTCACATTGTTTCTCCATCTCAAGAAGGTTCGAGCATTTCAG ATTCCTCTTCACTTGCTATGGATAACAAGGGTCTCTCAGTGCCTAGTACTAACGGTGGTCTTGAGGATGTTGGGATATTTATGGATTCCGAACCTGGTTT TCCTAGTGATTTTTTCAATGGCCTTTTGCTTCAAGACAAAGCTAGTGAAGTGGCCACTAATTGCTACCAATATTTTGCTGGTTTTGGCTATGTTGATATT AAGCCGTAA
AA sequence Show only first row Show all	>Potri.006G234200.1 pacid=42770560 polypeptide=Potri.006G234200.1.p locus=Potri.006G234200 ID=Potri.006G234200.1.v4.1 annot-version=v4.1 MGRAPCCDKANVKRGPWSPEEDATLKSYLETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYSQMGSRWSLIAAQLPGR TDNDVKNYWNTKLKKKILAGKISLTIKNNPINAPVNVANIPAIPCSTSPILYVPKAETESSVTFSDHYSLTQISGTLPALSDIGYEPIINSTAQNLSPNQ FQFSSFPGVIDMSEFSMNSTHIVSPSQEGSSISDSSSLAMDNKGLSVPSTNGGLEDVGIFMDSEPGFPSDFFNGLLLQDKASEVATNCYQYFAGFGYVDI KP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.006G234200 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	5.00	0.7380
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.013G065100 [exp]	5.83	0.7239
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.003G076200 [exp]	10.95	0.6335
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	14.07	0.6734
AT1G14550			Peroxidase superfamily protein...		Potri.010G236890 [exp]	17.74	0.6628
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.003G219300 [exp]	19.33	0.6279
AT4G20820			FAD-binding Berberine family p...		Potri.001G461900 [exp]	20.78	0.6238
AT1G14550			Peroxidase superfamily protein...		Potri.010G236900 [exp]	21.16	0.6359
AT4G20820			FAD-binding Berberine family p...		Potri.001G461700 [exp]	23.08	0.6376
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	25.03	0.6514

Compare expression of checked genes

Potri.006G234200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.