Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 107 / 1e-27 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G49630 106 / 2e-27 AAP6 amino acid permease 6 (.1) AT1G44100 102 / 1e-25 AAP5 amino acid permease 5 (.1) AT5G63850 100 / 3e-25 AAP4 amino acid permease 4 (.1) AT1G58360 100 / 4e-25 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G09220 96 / 2e-23 AAP2 amino acid permease 2 (.1) AT1G10010 93 / 1e-22 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 74 / 1e-15 AAP7 amino acid permease 7 (.1.2) AT5G41800 39 / 0.001 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236000 [exp] 125 / 2e-34 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.002G112100 [exp] 111 / 5e-29 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G068900 [exp] 106 / 3e-27 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 105 / 4e-27 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 105 / 5e-27 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 101 / 2e-25 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 101 / 2e-25 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 100 / 3e-25 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 99 / 1e-24 AT1G77380 751 / 0.0 amino acid permease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028236 [exp] 105 / 1e-26 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10007235 [exp] 102 / 8e-26 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 100 / 5e-25 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 99 / 1e-24 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10042744 [exp] 99 / 1e-24 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 98 / 2e-24 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10035663 [exp] 97 / 5e-24 AT1G10010 569 / 0.0 amino acid permease 8 (.1) Lus10029703 [exp] 97 / 7e-24 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037248 [exp] 95 / 3e-23 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10012443 [exp] 93 / 6e-23 AT1G10010 150 / 1e-41 amino acid permease 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.006G236100.2 pacid=42769661 polypeptide=Potri.006G236100.2.p locus=Potri.006G236100 ID=Potri.006G236100.2.v4.1 annot-version=v4.1 ATGGGGTCTTCTTCACAGGACTTCAAATTTCTAAATAATTACAAGCAATTGAAGTCAAAATATCGTCCCAGGTTACCACTTGCTAAGGTATTATCCCAAC CAGTTTTCGGTGCATTAGAGACCTGGGCTAGCCTGGTGTGGCCTGATTCAAAGTTTGCAACCATCGAGCATTCAATAAGGATAGGGAAATACATAAATTT TAGGGGGAACTTGCTAAGACTAATATGGAGAACAGTATATGTGGTGGTGGTAACTGTGCTTGCCATGGCATTCCCCTTCTTCAACGACGTCCTTGCACTC CTTGGAGCCGTTGGGTATTGGCCAATGACAGTATATTTTCCTGTGGAGATGTACATTGCTCAAAAGAAGATTCAACGGGGATCAGTCAAGTGGTTTGTTC TCCAGCTTTTGAACTTGGTGTGCTTACTGGTTGCCATAGCTGCGGCATGTGGTGCCATTGAAGGATTGAATCATGCTCTTCAAAACTCTAAGCCCTTCAA GTTTTAA
AA sequence Show only first row Show all	>Potri.006G236100.2 pacid=42769661 polypeptide=Potri.006G236100.2.p locus=Potri.006G236100 ID=Potri.006G236100.2.v4.1 annot-version=v4.1 MGSSSQDFKFLNNYKQLKSKYRPRLPLAKVLSQPVFGALETWASLVWPDSKFATIEHSIRIGKYINFRGNLLRLIWRTVYVVVVTVLAMAFPFFNDVLAL LGAVGYWPMTVYFPVEMYIAQKKIQRGSVKWFVLQLLNLVCLLVAIAAACGAIEGLNHALQNSKPFKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	7.74	0.9042
AT3G19920			unknown protein		Potri.007G073600 [exp]	8.00	1.0000
					Potri.006G017750 [exp]	8.12	0.9556
					Potri.008G053150 [exp]	9.00	1.0000
AT3G51020			unknown protein		Potri.002G011500 [exp]	11.31	0.8968
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.014G017100 [exp]	11.40	0.8667
AT5G20045			unknown protein		Potri.008G015800 [exp]	14.49	0.8268
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	15.87	0.9197
					Potri.003G109601 [exp]	17.32	0.8437
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	20.39	0.9085

Compare expression of checked genes

Potri.006G236100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.