Plant FIBer expression Database

Potri.006G245900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25680 496 / 3e-174 MOT1 molybdate transporter 1 (.1)
AT1G80310 358 / 9e-120 MOT2 molybdate transporter 2, sulfate transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G246000
[exp]
670 / 0 AT2G25680 556 / 0.0 molybdate transporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016331
[exp]
546 / 0 AT2G25680 577 / 0.0 molybdate transporter 1 (.1)
Lus10025816
[exp]
404 / 7e-138 AT1G80310 577 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10038286
[exp]
387 / 4e-131 AT1G80310 571 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10019046
[exp]
46 / 1e-05 AT2G25680 55 / 3e-09 molybdate transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF16983 MFS_MOT1 Molybdate transporter of MFS superfamily
Representative CDS sequence
>Potri.006G245900.1 pacid=42768334 polypeptide=Potri.006G245900.1.p locus=Potri.006G245900 ID=Potri.006G245900.1.v4.1 annot-version=v4.1
ATGGAGTCCTCCGCCAACCAAATACCTCTTCAAGACATCCAAGCTCAAGCACCCAGATCAAGGTTTCTATCGAATGTAGTCGACAAAGTGAGAGACAACC
TTGTCTTTCGATCCAAAATATGGGCAGAGCTTAATGGTGCCATGGGGGATTTAGGTACGTACATACCAATAGTACTGGCCTTAACATTATCCGTTGATCT
TAATTTAGGGACAACATTAATATTCACTGGCATATACAACATTCTTACTGGGGCAATCTATGGCGTGCCAATGCCAGTCCAGCCAATGAAATCGATAGCT
GCTGTGGCTATATCAAATAGTGCAGAATTTGGCGTGCCCGAAATCATGGCAGCAGGAATATGTACTGGTGGGATTTTGTTACTTTTAGGTGTCACGGGTC
TGATGCAGCTTGTTTATAAGCTAATCCCACTACCCGTTGTTAGAGGAATTCAGCTTTCACAAGGGTTATCTTTTGCCATGACTGCGGTCAAGTATATCAG
GAAAGTACAAGATTTTTCCAAGTCAAAGTCTGGTGGTGATAGGCATTGGTTAGGTGTAGATGGTTTGGTTCTGGCTATTGTTTGTGCTTGTTTTGTTATT
GTTGTTAACGGTGCTGGTGAGGAGGGTAATACTGAAAGAGATGGCGATGACATTAATTTGGATGGTAGAGATCAAAGGCCTAAGAGGAGGGGACCGCGGC
AGATTGTAGCCTCACTGCCTTCTGCTTTTATGGTTTTCTTGTTGGGTGTGATTTTGGCATTTATAAGAAGGCCTGGAGTGGTGCGGGGTTTTAAGTTTGG
ACCATCTTCAATTGAAGTTGTGAAGATTTCTAAGCATGCTTGGAAACAGGGGTTTATCAAGGGTACAATTCCCCAGCTCCCTCTATCAGTTCTAAATTCT
GTTATTGCTGTGTGCAAGTTGTCATCCGATCTGTTTCCGGGAAAGGATTTCTCGGCCTCCTCCGTTTCGGTATCTGTAGGACTGATGAACATAGTGGGGT
GTTGGTTCGGCGCCATGCCATGCTGCCATGGTGCAGGTGGACTGGCTGGGCAGTACAAGTTTGGCGGCAGGAGTGGAGGGTGTGTGGCACTTCTCGGGGC
AGCAAAAATGCTACTGGGTTTGGTTTTAGGTAGTTCTTTAGTCATGGTTTTGAAACAATTTCCTGTTGGGGTCTTGGGGGTGTTGCTGTTATTTGCTGGA
ATTGAGTTGGCTTTGGCTTCAAGGGACATGAACACAAAGGAGGAATCCTTTGTGATGCTTATATGCGCTGCGGTTTCACTGGTGGGTTCAAGCGCATCAC
TTGGCTTTGTTTGTGGAACGATTGTGCATGTGCTTCTTCATTTGAGAAACTGGCGAAAAGAGCAGCCATGTCCTGCTGTATAG
AA sequence
>Potri.006G245900.1 pacid=42768334 polypeptide=Potri.006G245900.1.p locus=Potri.006G245900 ID=Potri.006G245900.1.v4.1 annot-version=v4.1
MESSANQIPLQDIQAQAPRSRFLSNVVDKVRDNLVFRSKIWAELNGAMGDLGTYIPIVLALTLSVDLNLGTTLIFTGIYNILTGAIYGVPMPVQPMKSIA
AVAISNSAEFGVPEIMAAGICTGGILLLLGVTGLMQLVYKLIPLPVVRGIQLSQGLSFAMTAVKYIRKVQDFSKSKSGGDRHWLGVDGLVLAIVCACFVI
VVNGAGEEGNTERDGDDINLDGRDQRPKRRGPRQIVASLPSAFMVFLLGVILAFIRRPGVVRGFKFGPSSIEVVKISKHAWKQGFIKGTIPQLPLSVLNS
VIAVCKLSSDLFPGKDFSASSVSVSVGLMNIVGCWFGAMPCCHGAGGLAGQYKFGGRSGGCVALLGAAKMLLGLVLGSSLVMVLKQFPVGVLGVLLLFAG
IELALASRDMNTKEESFVMLICAAVSLVGSSASLGFVCGTIVHVLLHLRNWRKEQPCPAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25680 MOT1 molybdate transporter 1 (.1) Potri.006G245900
[exp]
0 1
AT4G02460 PMS1 POSTMEIOTIC SEGREGATION 1, DNA... Potri.014G130800
[exp]
3.74 0.8433
AT1G19880 Regulator of chromosome conden... Potri.002G026600
[exp]
56.08 0.7794
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.016G084500
[exp]
57.11 0.7643
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.006G024200
[exp]
109.48 0.7652
AT2G30480 unknown protein Potri.013G157800
[exp]
162.62 0.7758
AT4G25420 AT2301, GA5, AT... GA REQUIRING 5, ARABIDOPSIS TH... Potri.002G151300
[exp]
241.89 0.7601 GA20ox2-1

Potri.006G245900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.