Plant FIBer expression Database

Potri.006G246000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25680 557 / 0 MOT1 molybdate transporter 1 (.1)
AT1G80310 388 / 2e-131 MOT2 molybdate transporter 2, sulfate transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G245900
[exp]
716 / 0 AT2G25680 496 / 4e-174 molybdate transporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016331
[exp]
578 / 0 AT2G25680 577 / 0.0 molybdate transporter 1 (.1)
Lus10025816
[exp]
443 / 3e-153 AT1G80310 577 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10038286
[exp]
418 / 3e-143 AT1G80310 571 / 0.0 molybdate transporter 2, sulfate transmembrane transporters (.1)
Lus10019046
[exp]
66 / 1e-12 AT2G25680 55 / 3e-09 molybdate transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF16983 MFS_MOT1 Molybdate transporter of MFS superfamily
Representative CDS sequence
>Potri.006G246000.1 pacid=42768477 polypeptide=Potri.006G246000.1.p locus=Potri.006G246000 ID=Potri.006G246000.1.v4.1 annot-version=v4.1
ATGGAGTCCCCAAGTTACCAAATGCCTCTTCGTGATACACCAACTCAAGCACCCAGATCAAGATTTCCATCAAATATAGTCCACAAAGTGAGAGACAACC
TTGTCTTTCGATCCAAATGGGCAGAACTTAATGGTGCCATGGGGGATCTAGGTACGTACATACCAATCGTACTGGCCTTAACATTATCCGTTGACCTTAA
TTTAGGGACAACATTAATATTCACTGGCATATACAACATTCTTACTGGGGCAATCTATGGTGTTCCAATGCCAGTCCAGCCAATGAAATCGATAGCAGCT
GTGGCTATATCAAATAGTGCAGAATTTGGCGTGCCCGAAATTATGGCAGCAGGAATATGTACTGGTGGGATTTTGTTCCTTTTAGGTGTTACAGGTTTGA
TGCAGCTTGTTTATAAGTTGATTCCATTGTCTGTTGTTAGGGGAATTCAGCTGTCACAAGGGTTATCATTTGCCATGTCTGCTGTGAAGTATATTAGGAA
AGTACAAGATTTTTCTAAGTCGAAGTCTGATGATGATAGGCACTGGTTAGGGTTAGATGGTCTGGTTCTGGCTATTGTTTGTTCTTTTTTTATTATTGTT
GTTAACGGTGCTGGTGAGGAGGGTAGTGAAAGAGAGGGTGATGACATTAATTTGGGTGGTAGAGAAAGGCCTAGGAAGAGGGGGCTGAGGCAAATGGTAG
CCTCACTTCCTTCTGCTTTTATGGTTTTCTTGTTGGGTGTGATTTTGGCATTTATAAGAAGGCCTGGAGTGGTGCATGATTTTAAGTTTGGCCCATCTTC
TATTGAGGCTGTGAAAATTTCTAAGCATGCTTGGAAAGAAGGGTTTGTCAAGGGTACAATTCCTCAGCTCCCTCTATCAGTACTAAATTCTGTTATTGCT
GTGTGCAACTTGTCATCTGATCTGTTTCCAGGAAAGGATTTCTCGGCATCCTCGGTTTCCGTGTCTGTAGGGCTGATGAATTTAGTGGGATGTTGGTTTG
GTGCCATGCCATGTTGCCATGGTGCAGGAGGACTGGCTGGGCAGTACAAGTTTGGAGGTAGGAGTGGAGGTTGTGTGGCACTACTTGGAGCAGCCAAATT
GGTTTTGGGTTTGGTTTTAGGAAGTTCTTTAGTGATGGTTTTGAACCAATTCCCTGTTGGAGTCTTGGGGGTGTTGCTATTGTTTGCTGGAATTGAGTTG
GCTATGGCCTCAAGAGACATGAATACGAAGGAGGAAGCCTTTGTGATGCTTATATGCTCTGCGGTTTCAATAACGGGTTCAAGTGCAGCACTTGGCTTTG
TGTGTGGGATTGCTGTGCATCTGCTTCTTAAAGTGAGAAACTGGCATAACGACCAGCCATGTTCAACAGTTTAG
AA sequence
>Potri.006G246000.1 pacid=42768477 polypeptide=Potri.006G246000.1.p locus=Potri.006G246000 ID=Potri.006G246000.1.v4.1 annot-version=v4.1
MESPSYQMPLRDTPTQAPRSRFPSNIVHKVRDNLVFRSKWAELNGAMGDLGTYIPIVLALTLSVDLNLGTTLIFTGIYNILTGAIYGVPMPVQPMKSIAA
VAISNSAEFGVPEIMAAGICTGGILFLLGVTGLMQLVYKLIPLSVVRGIQLSQGLSFAMSAVKYIRKVQDFSKSKSDDDRHWLGLDGLVLAIVCSFFIIV
VNGAGEEGSEREGDDINLGGRERPRKRGLRQMVASLPSAFMVFLLGVILAFIRRPGVVHDFKFGPSSIEAVKISKHAWKEGFVKGTIPQLPLSVLNSVIA
VCNLSSDLFPGKDFSASSVSVSVGLMNLVGCWFGAMPCCHGAGGLAGQYKFGGRSGGCVALLGAAKLVLGLVLGSSLVMVLNQFPVGVLGVLLLFAGIEL
AMASRDMNTKEEAFVMLICSAVSITGSSAALGFVCGIAVHLLLKVRNWHNDQPCSTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25680 MOT1 molybdate transporter 1 (.1) Potri.006G246000
[exp]
0 1
AT1G78560 Sodium Bile acid symporter fam... Potri.003G008700
[exp]
1.41 0.8389
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.017G048200
[exp]
10.86 0.8228
AT5G20670 Protein of unknown function (D... Potri.012G042000
[exp]
25.21 0.8188
AT3G57800 bHLH bHLH060 basic helix-loop-helix (bHLH) ... Potri.006G057200
[exp]
51.96 0.7809
AT1G11120 unknown protein Potri.004G037200
[exp]
54.09 0.7809
AT4G16390 SVR7 suppressor of variegation 7, p... Potri.006G018600
[exp]
56.49 0.7449
AT4G30700 Pentatricopeptide repeat (PPR)... Potri.016G077700
[exp]
64.87 0.7543
AT4G31980 unknown protein Potri.017G145100
[exp]
82.70 0.7362
AT1G67480 Galactose oxidase/kelch repeat... Potri.008G176000
[exp]
104.48 0.7588
AT1G07300 josephin protein-related (.1) Potri.009G043501
[exp]
121.09 0.7254

Potri.006G246000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.