Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15460 923 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT4G32510 917 / 0 HCO3- transporter family (.1) AT5G25430 900 / 0 HCO3- transporter family (.1) AT1G74810 894 / 0 BOR5 HCO3- transporter family (.1) AT3G62270 763 / 0 HCO3- transporter family (.1) AT2G47160 759 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G06450 734 / 0 HCO3- transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031700 [exp] 1169 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 1019 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 993 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 928 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.008G100300 [exp] 781 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 754 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 746 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 736 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 735 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008083 [exp] 993 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 988 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 846 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10038060 [exp] 756 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 750 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10043299 [exp] 730 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10009995 [exp] 714 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 679 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00955 [poplar] [flax] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G249800.2 pacid=42768927 polypeptide=Potri.006G249800.2.p locus=Potri.006G249800 ID=Potri.006G249800.2.v4.1 annot-version=v4.1 ATGGAGAACATGAGGAGGCCATTCAAGGGAATAACAAATGATGTGAGAGAGAGAATAGGATGTTATAAGGATGATTGGATTAGTGGACTGTGTTCAGGCT TCAGAATATTGGCTCCAACTTTTTACATCTTCTTTGCTTCTGCCCTTCCTGTGATTGCCTTTGGAGAGCAATTAAGTAGAGACACAGATGGAAGCTTGAG TACTGTGGAAACCTTAGCTTCTACTGCTATTTGTGGAATAATCCACTCGGTTTTCGGTGGACAGCCATTGTTGATTCTAGGGGTTGCAGAACCTACTGTT ATAATGTACACTTATCTGTATACTTTCAGTAAAGGAAGGGAAGAGTTGGGGAAGAAATTATACCTAGCTTGGGCTGGTTGGGTTTGTGTCTGGACAGCAC TCCTACTAGTTCTTATTGCAATTTTTAATGCTGCTACCATCATCTCTAAATTTACAAGAATAGCAGGGGAGCTTTTTGGCATGTTGATTGCAGTCCTTTT CATTCAAGAGGCTGTTAGGGGAGTGATAAGTGAATTCAATATTCCTAAAGATGAAAATCCAAAACTGGAGAAGCACCAATTCCAGTGGCTGTATGCAAAT GGATTGCTTTCTGTAATCTTCTCATTCGGTGTGCTGTTCACTTCCCTTAAAAGCCGAAGGGCAAGAACATGGCGATATGGCACAGGGTGGCTCCGAGGTT TTATTGCAGACTATGGAGTTCCCCTTATGGTCTTGTTGTGGACAGCATTGTCGTATGCCGGACCTGGCAAAGTTCCTTCTGGGGTTCCTAGGAGAGTTCA TGTTCCACTTCTATGGGATTCTGAATCACTGGAACATTGGACAGTAATCAATGACATGCTGAAGGTTCCTCTGACATACATCTTTGCGGCCTTAATACCA GCTGTTATGATAGCTGGATTATACTTTTTTGACCACAGTGTAGCTTCACAGATGGCCCAACAGAAAGAGTTTAATCTCAAAAATCCATCTGCTTACCATT ATGATGTCTTTTTGCTTGGTTTAATGACTTTGATTTGTGGGTTGCTTGGGCTCCCTCCTTCGAATGGTGTCCTCCCCCAGTCCCCCATGCACACCAAGAG TCTTGCAGTTCTCAGGAGGCAGTTGATTCGAAAGAAAATGGTAAAGAGAGCAAAGGAATGCATAGGCCGGAAGGCAAGCAATTTGGAAATTTATGGAAGC ATGCAAGCTGTGTTTTTGGAAATGGATGCGTCTTCACCTGATGTTTCAGTACATAAGGAGTTGGAGGACTTTAAGCAGGCTGTAATGAAAGCTGCTGAAG GATGGGATGATAAGAACAAATTCGATCCTGAGAAACACATTGATGCTTATTTGCCTGTGAGAGTCAATGAACAAAGAATTAGCAACCTGTTACAGTCAAC CCTTGTTGGGGCATCAATGTGTGCTTTGCCTCTGATAAAAAGAATACCTACATCAGTTTTATGGGGATACTTTGCCTACATGGCCATTGATAGTCTTCCA GGGAATCAGTTCTGGGAAAGGATGTTGTTGCTCTTCGTCACACCTAGCCGACGTTACAAAGTCTTGGAAGGTTTACACGCTTCATTTGTAGAGCTGGTGC CGTTCAAGCAAATTGCTATCTTCACAATCTTCCAACTTGTCTACTTTTTGATCTGTTTTGGAGTGACATGGATACCCATAGCTGGAATATTGTTCCCGCT ACCATTCTTCATTCTTATTGGCATAAGGCAGCGCATCCTGCCCAAGCTATTTGATCCTGACCACCTTCAAGAACTGGATGCTGATGAGTATGAAGAAATG ACCGGTGCTAAACCACGAAGCCTTTCACTCAGGGAAAGAGAACCACCTGATGTAGGGTCTGATGGGGGTGCGGATGATTTCTATGATGCTGAGATACTTG ATGAGATGACAACCAACAGAGGCGAGTTGAAGCTTAGAACTTCAAGCCTCAAAGAAGAGAGATTACATCAGGTCCGTCCACAGGAATCAGGATGA
AA sequence Show only first row Show all	>Potri.006G249800.2 pacid=42768927 polypeptide=Potri.006G249800.2.p locus=Potri.006G249800 ID=Potri.006G249800.2.v4.1 annot-version=v4.1 MENMRRPFKGITNDVRERIGCYKDDWISGLCSGFRILAPTFYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSVFGGQPLLILGVAEPTV IMYTYLYTFSKGREELGKKLYLAWAGWVCVWTALLLVLIAIFNAATIISKFTRIAGELFGMLIAVLFIQEAVRGVISEFNIPKDENPKLEKHQFQWLYAN GLLSVIFSFGVLFTSLKSRRARTWRYGTGWLRGFIADYGVPLMVLLWTALSYAGPGKVPSGVPRRVHVPLLWDSESLEHWTVINDMLKVPLTYIFAALIP AVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHYDVFLLGLMTLICGLLGLPPSNGVLPQSPMHTKSLAVLRRQLIRKKMVKRAKECIGRKASNLEIYGS MQAVFLEMDASSPDVSVHKELEDFKQAVMKAAEGWDDKNKFDPEKHIDAYLPVRVNEQRISNLLQSTLVGASMCALPLIKRIPTSVLWGYFAYMAIDSLP GNQFWERMLLLFVTPSRRYKVLEGLHASFVELVPFKQIAIFTIFQLVYFLICFGVTWIPIAGILFPLPFFILIGIRQRILPKLFDPDHLQELDADEYEEM TGAKPRSLSLREREPPDVGSDGGADDFYDAEILDEMTTNRGELKLRTSSLKEERLHQVRPQESG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G249800 [exp]	0	1
					Potri.001G169351 [exp]	9.79	1.0000
					Potri.001G196900 [exp]	15.49	1.0000
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	21.90	1.0000
					Potri.001G276804 [exp]	25.61	1.0000
					Potri.001G330250 [exp]	27.16	1.0000
AT4G05230			Ubiquitin-like superfamily pro...		Potri.004G022400 [exp]	29.49	1.0000
					Potri.002G092751 [exp]	30.98	1.0000
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	32.86	1.0000
					Potri.003G015466 [exp]	33.94	1.0000
					Potri.003G072050 [exp]	35.32	1.0000

Compare expression of checked genes

Potri.006G249800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.