Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 98 / 4e-23 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 64 / 3e-11 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 59 / 1e-09 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G06890 58 / 4e-09 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21070 55 / 3e-08 Nucleotide-sugar transporter family protein (.1) AT2G28315 54 / 4e-08 Nucleotide/sugar transporter family protein (.1) AT2G30460 52 / 2e-07 Nucleotide/sugar transporter family protein (.1.2) AT1G34020 52 / 2e-07 Nucleotide-sugar transporter family protein (.1) AT1G77610 49 / 3e-06 EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026600 [exp] 565 / 0 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 417 / 2e-146 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 112 / 4e-28 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 105 / 1e-25 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 67 / 5e-12 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.004G211900 [exp] 62 / 2e-10 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 61 / 3e-10 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.007G106400 [exp] 61 / 5e-10 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 56 / 2e-08 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038090 [exp] 378 / 1e-131 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 336 / 3e-114 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10020119 [exp] 100 / 8e-24 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 100 / 1e-23 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10024126 [exp] 61 / 4e-10 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 60 / 1e-09 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 58 / 5e-09 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10037397 [exp] 49 / 4e-06 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 48 / 5e-06 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10025645 [exp] 48 / 5e-06 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G255400.3 pacid=42769964 polypeptide=Potri.006G255400.3.p locus=Potri.006G255400 ID=Potri.006G255400.3.v4.1 annot-version=v4.1 ATGTCTCCGATGGCTTCAAGTTCCTCTTCCAATTCAATCCTTCCAGTCTCCGTATCTCCACTCGACGATGAGAGGCAAAGAGAGAAAGAGAGACTGATCA AGGGGGACGAGAAGGCCTTCAGAGGATCTTCAATGACTAAGAGAGGAGCTTATGCTGCTATTTCTTACATGTCGTGTGCAGTGCTTTTGGTATTGTTCAA TAAAGCAGCTCTTTCTTCTTATAACTTCCCTAGTGCAAATGTCATAACATTATTTCAGATGATATGCTCGTGCTCTTTTCTGTATGCATTGAGACGCTGG AGAATTATATCTTTCACTGATGGTGGATCTTTAACTACTTCTGATGTCAACGCTACTTTTGTACCACTGGAGACATTGATGCACACCCTACCTCTTGCAT TGACTTATTTGCTTTACATGCTAGTTACAATGGAGTCTGTCCGTGGGGTAAATGTTCCCATGTATACCACCCTAAGGCGGACAACAGTGGTATTTACAAT GATAATGGAGTATATTCTGGCAGGGCAAAGATATACACGTCCAATTTTTGGAAGTGTTGGGTTGATAGTTCTTGGTGCATTTATTGCTGGAGCACGGGAC TTGTCATTTGACTTCTATGGCTATGCTGTTGTCTTCGCAGCCAATTTTACAACGGCTATATATCTGGCAACCATAAGCCGTATTGGGAAATCCAGTGGCC TAAATAGCTTTGGCCTTATGTGGTGCAATGGAATTATATGTGGACCGGTTTTGTTATTTTGGACATTTATCCGTGGCGATTTGGGGATGACAATGAATTT CCCATATCTGTTTTCCCTGGGTTTCTTGGCTGTATTGCTTCTTTCATGTATCCTGGCTTTCTTCTTGAATTACAGTATCTTCCTGAACACAACTCTCAAT TCAGCACTCACACAAACAATTTGTGGTAACCTTAAGGATCTTTTTACCATTGCACTTGGCTGGACTATTTTTGGTGGGCTTCCTTTTGATTTTTTCAATG TCATTGGGCAATGCCTTGGTTTTGCTGGCTCCGGTTTGTATGCCTACTATAAGCTCATAGGGAGGTAA
AA sequence Show only first row Show all	>Potri.006G255400.3 pacid=42769964 polypeptide=Potri.006G255400.3.p locus=Potri.006G255400 ID=Potri.006G255400.3.v4.1 annot-version=v4.1 MSPMASSSSSNSILPVSVSPLDDERQREKERLIKGDEKAFRGSSMTKRGAYAAISYMSCAVLLVLFNKAALSSYNFPSANVITLFQMICSCSFLYALRRW RIISFTDGGSLTTSDVNATFVPLETLMHTLPLALTYLLYMLVTMESVRGVNVPMYTTLRRTTVVFTMIMEYILAGQRYTRPIFGSVGLIVLGAFIAGARD LSFDFYGYAVVFAANFTTAIYLATISRIGKSSGLNSFGLMWCNGIICGPVLLFWTFIRGDLGMTMNFPYLFSLGFLAVLLLSCILAFFLNYSIFLNTTLN SALTQTICGNLKDLFTIALGWTIFGGLPFDFFNVIGQCLGFAGSGLYAYYKLIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	0	1
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Potri.005G134400 [exp]	2.23	0.7648
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	16.52	0.7284
AT2G40600			appr-1-p processing enzyme fam...		Potri.013G092700 [exp]	16.61	0.7305
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	25.09	0.7262
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.016G094300 [exp]	27.16	0.6158
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	33.00	0.7184
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.002G212701 [exp]	34.17	0.6387
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	36.41	0.6546
AT4G18593			dual specificity protein phosp...		Potri.006G040300 [exp]	55.96	0.6912
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	57.96	0.6723

Compare expression of checked genes

Potri.006G255400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.