Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 93 / 2e-21 Nucleotide/sugar transporter family protein (.1.2) AT5G19980 49 / 3e-06 GONST4 golgi nucleotide sugar transporter 4 (.1) AT3G17430 46 / 3e-05 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009400 [exp] 496 / 1e-178 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G255400 [exp] 89 / 6e-20 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 85 / 3e-18 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 83 / 6e-18 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G071700 [exp] 46 / 2e-05 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.008G214300 [exp] 45 / 6e-05 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020119 [exp] 433 / 1e-153 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 427 / 3e-151 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10038090 [exp] 87 / 3e-19 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 56 / 2e-08 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10033058 [exp] 52 / 2e-07 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 51 / 5e-07 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 50 / 1e-06 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 49 / 2e-06 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10018339 [exp] 46 / 2e-05 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G270700.8 pacid=42768513 polypeptide=Potri.006G270700.8.p locus=Potri.006G270700 ID=Potri.006G270700.8.v4.1 annot-version=v4.1 ATGGAAAATCGCAGTGAAGCAGAAGCAAGTCCTTATAAGAGTTTGGTTGCGGCCGTGTCATATGGAATTGCTTCAATGGCTATGGTTTTTATCAATAAGG CCATTTTGATGCAATATGGTCACTCAATGACCCTTCTCACTTTGCAGCAATTGGCGACGGCATTGCTTATACATTTTGGTAGACGAACAGGGTATACGAG AGCGAGGGGAGTCGATATGCAAACAGCTAAAAGACTTCTCCCAGTTTCGTTGTTCTACAATGCTAATGTAGCTTTTGCTTTGGCTAGCTTGAGAGGAGTT AATATTCCTATGTATATTGCAATAAAGAGACTCACACCGCTTGCAGTACTTATAGCTGGAATTTTCTCAGGAAAGGGAAAGCCTACAACACAGGTTACTC TTTCCGTGCTATTGATTGCTGCTGGAGTTATTATAGCAGCACTTGGAGATTTTTCTTTTGACCTTTGGGGATACGGCATGGCCCTTACTTCTGTTTTCTT TCAGACGATGTACCTTGTTTTAGTTGAAAGATCTGGTGCTGAGGATGGCCTCTCTTCAGTTGAGATAATGTTCTACAACAGCTTTTTGTCTCTTCCATTC TTGATATTTCTCATCATAATTACAGGGGAATTTCCAAACTCTTTAGCATTATTGTTTGCAAAGAGTAATTCCTTATCATTTTTGGTGATCCTTGTTATTT CATTAATAATGGGCATAGTTCTCAACTTCACAATGTTCTTATGTACCATAGTCAACTCAGCTCTAACAACAACCATTGTGGGAGTCCTCAAAGGTGTTGG GTCCACGACCCTTGGTTTTGTCCTCCTGGGTGGTGTGGAAGTGCATGCTTTGAACGTGACTGGATTGGTTATCAACACAGCGGGTGGTTTGTGGTACTCA TATGCCAAATACCAGCAAAAGACGAGTAAACCTCCAAAGAGAATATCAGATGTAGAGGCTCGTAGCAAATAA
AA sequence Show only first row Show all	>Potri.006G270700.8 pacid=42768513 polypeptide=Potri.006G270700.8.p locus=Potri.006G270700 ID=Potri.006G270700.8.v4.1 annot-version=v4.1 MENRSEAEASPYKSLVAAVSYGIASMAMVFINKAILMQYGHSMTLLTLQQLATALLIHFGRRTGYTRARGVDMQTAKRLLPVSLFYNANVAFALASLRGV NIPMYIAIKRLTPLAVLIAGIFSGKGKPTTQVTLSVLLIAAGVIIAALGDFSFDLWGYGMALTSVFFQTMYLVLVERSGAEDGLSSVEIMFYNSFLSLPF LIFLIIITGEFPNSLALLFAKSNSLSFLVILVISLIMGIVLNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHALNVTGLVINTAGGLWYS YAKYQQKTSKPPKRISDVEARSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.006G270700 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	5.00	0.7064
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.014G129900 [exp]	6.63	0.6988
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	6.92	0.6883
AT1G54730			Major facilitator superfamily ...		Potri.013G027500 [exp]	10.95	0.6739
AT3G05675			BTB/POZ domain-containing prot...		Potri.006G202900 [exp]	16.97	0.6403
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	25.51	0.6579
AT1G26520			Cobalamin biosynthesis CobW-li...		Potri.008G094100 [exp]	27.45	0.6338
AT1G22460			O-fucosyltransferase family pr...		Potri.005G161800 [exp]	33.91	0.6350
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	34.95	0.6086
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	38.67	0.6567

Compare expression of checked genes

Potri.006G270700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.