Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 345 / 9e-102 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 312 / 2e-88 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 237 / 4e-65 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46530 187 / 8e-49 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46710 186 / 3e-48 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 183 / 3e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 176 / 3e-45 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 176 / 5e-45 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59780 174 / 3e-44 NB-ARC domain-containing disease resistance protein (.1) AT1G50180 172 / 6e-44 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272066 [exp] 1665 / 0 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 1560 / 0 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 1486 / 0 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 465 / 5e-146 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 465 / 2e-145 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 461 / 4e-144 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 459 / 8e-144 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 449 / 1e-139 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 446 / 8e-139 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 585 / 0 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 566 / 0 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 543 / 2e-175 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 529 / 2e-170 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 523 / 4e-165 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 358 / 7e-106 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 347 / 6e-101 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 345 / 4e-100 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 340 / 3e-98 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10008584 [exp] 320 / 5e-96 AT3G14470 186 / 2e-49 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.006G271800.2 pacid=42768605 polypeptide=Potri.006G271800.2.p locus=Potri.006G271800 ID=Potri.006G271800.2.v4.1 annot-version=v4.1 ATGGCTGAAGGTGTGCTCTTCACTATTGCGGAGGAAATAATAAAGACATTAGGTTCCCTAACTGCTCAGGAGGTTGCACTATGGTGGGGGCTCAAAGATC AATTGCGGAAGCTCAATGACACAGTTACCAGGATTAAGGCTGTGATTCAAGACGCTGAGGAGCAGGCACAAAAACAGAACTATCAAATCGAAGACTGGCT CATGAAGCTGCAGGAAGCTGTATACGATGCAGAGGATTTGCTGGACGATTTCTCAACACAAGTTCTGCGGAAACAGTTGATGCCTGGGAAAAGAGTATCG AGGGAGGTACGCCTTTTTTTCTCAAGATCAAACCAATTTGTGTATGGTTTACGGATGGGTCATAGAGTGAAAGCACTTAGAGAGAGACTAGATGACATTG GAACTGACAGTAAAAAATTCAAATTTGATGTTCGTGGTGAGGAGAGAGCTTCTTCGACCACTGTGAGGGAGCAAACTACCTCATCTGAACCTGAAATAAC AGTTGGGAGAGTGAGAGACAAAGAGGCAGTTAAAAGTTTTCTGATGAATTCCAACTATGAACATAATGTTTCTGTCATCTCCGTAGTTGGAATGGGAGGG TTGGGGAAGACCACACTAGCTCAACATGTTTTCAATGATGAGCAAGTTAAGGCGCACTTTGGTGTGAGACTCTGGGTAAGTGTCTCAGGCAGCTTAGATG TTAGAAAGATTATCACAGGGGCTGTAGGTACTGGAGATTCTGATGATCAGTTAGAGAGTCTGAAAAAAAAGCTTGAAGGGAAAATAGAAAAAAAGAAGTA TCTTCTTGTATTGGATGATGTGTGGGATGGTGAGGTTGGTAAGGATGATGGTGAAAATTGGGATAGGTTGAAGGAGTTGTTACCACGTGATGCAGTAGGA AGTAAGATAGTGGTAACTACACGTTCTCATGTAATTGCCAATTTCACAAGGCCAATAGAACCACATGTTTTAAAAGGTCTGTCTGAAGATGAGTCATGGG AACTGTTTAGAAGAAAGGCATTTCCTCAAGGCCAGGAGTCGGGTCATGTCGATGAGAGGAATATTAAAGAAGAGATTGTAGGGAGGTGTGGTGGAGTTCC TTTGGTCATAAAGGCAATTGCGAGGTTAATGTCTTTGAAAGATAGAGCCCAGTGGTTGTCCTTTATACTAGATGAACTTCCGGATAGCATTAGAGATGAT AACATCATACAGACCCTTAAGTTAAGCTATGATGCTCTCCCATCATTTTTGAAGCATTGTTTTGCTTATTGTAGCTTATTTCCCAAAGGTCATAAGATAG ATATAAAATATTTGATTCGACTTTGGATTGCACAAGGGTTTGTTAGCTCTTCAAATTCAGGTCGGAGGTGTATTGAGATTGTTGGTCTCAAGTGCTTTGA GAGTTTACTATGGAGGTCCTTCTTTCACGAAGTGGAAAAGGATAGATTTGGAAACATAAAAAGTTGCAAAATGCATGATTTTATGCATGATCTTGCAACC CATGTCGCTGGTTTTCAGAGCATCAAAGTGGAGCGTCTAGGAAATAGGATTAGTGAATTGACTCGGCACGTGTCATTTGACACGGAATTAGATTTGTCTT TGCCTTGTGCACAACGTCTAAGAACACTTGTGTTGTTGCAAGGTGGAAAATGGGATGAGGGGTCATGGGAGTCTATTTGTCGAGAGTTTAGGTGTTTACG TGTGCTTGTTTTGAGTGATTTTGGAATGAAGGAAGCGTCACCTCTCATTGAAAAGATCAAGCACCTTAAATATCTTGATCTTTCGAATAATGAGATGGAG GCGCTTTCTAATTCTGTCACCAGTCTGGTAAATTTGCAAGTGCTCAAGCTCAATGGTTGTAGGAAACTTAAGGAACTACCTAGGGATATTGGTAAGCTAA TTAATCTGAGGCATCTTGATGTTGGTTGCTATCGTGATGGTGATTTATGTCAGAATTTAGAGTATATGCCTCGTGGGATTGGGAAATTAACTAGTCTACA GACGTTGTCATGTTTTGTGGTTGCAAAAAAAAGGAGTCCTAAATATGAGATGATAGGTGGATTGGATGAGTTGAGTAGGTTAAATGAATTGAGAGGGAGG CTAGAAATAAGAGCAAAGGGATATGAGGGTGGTTCTTGTATATCAGAATTTGAAGGAGCTAAATTGATCGATAAAAAATATCTTCAGTCGTTGACCGTAC GGTGGGACCCAGACCTGGATAGTGATTCAGATATTGATTTGTATGATAAAATGTTGCAAAGCCTCCGGCCAAACTCGAGTCTTCAAGAGTTGATAGTTGA AGGCTATGGAGGTATGAGGTTTCCTAGTTGGGTTTCAAATCTCTCAAATCTTGTAAGGATTCATCTAGAACGCTGTAGAAGACTTACGCATATCCCTCCC TTGCATGGAATCCCTTCTCTTGAAGAATTAAATATTGTGGGATTGGATGATTTGGAGTACATAGATAGTGAGGGGGTTGGAGGAATAGGAGGGTCGACGT TTTTCCCATCTTTAAAGACACTTGTTATCAAGCATTGTCGTAGACTGAAGGGATGGTGGAAGAGATGGAGTAGAGATGAGATGAATGATGATAGAGATGA GTCAACAATAGAAGAAGGGTTGATAATGCTCTTTTTTCCATGTCTTTCTTCTTTGAGCATTGTTGTGTGTCCAAATCTGACTTCAATGCCGTTGTTTCCA ACTCTCGATGAAGATCTTAATTTGATCAACACTAGTTCAATGCCATTACAGCAGACAATGAAGATGACATCACCAGTCTCTTCTTCTTCATTTACCCGTC CTCTCTCCAAATTGAAGATACTATTTATGTATTCAATTTATGACATGGAATCTCTTCCGGAAGTAGGGCTGCAAAATCTCTCTTCTCTTCAATCGCTATC GATCTGTGAATGCTCAAGATTGAAGTCTCTGCCACTGCCTGATCAGGGGATGCATTCTCTTCAGAAATTACTTATCTTTGACTGCAGAGAATTGAAGTCG CTATCTGAATCTGAATCTCAAGGGATGATACCCTACCTTCCCTCTTTGCAACGGTTAAGAATCGAGGACTGCAGTGAAGAGCTGAGCAGAAGAACGAGAG GATGGGGAAAGGAGAGGGAGGAGGAGTGGCCTCCTAACATTAAACACATTCCAGATATTGGAATTGATGGCTACTACATTCAAAAGGAGGGTCGCTATGT AAAGGGTGAAGGATTGAGATGGCACTACTAA
AA sequence Show only first row Show all	>Potri.006G271800.2 pacid=42768605 polypeptide=Potri.006G271800.2.p locus=Potri.006G271800 ID=Potri.006G271800.2.v4.1 annot-version=v4.1 MAEGVLFTIAEEIIKTLGSLTAQEVALWWGLKDQLRKLNDTVTRIKAVIQDAEEQAQKQNYQIEDWLMKLQEAVYDAEDLLDDFSTQVLRKQLMPGKRVS REVRLFFSRSNQFVYGLRMGHRVKALRERLDDIGTDSKKFKFDVRGEERASSTTVREQTTSSEPEITVGRVRDKEAVKSFLMNSNYEHNVSVISVVGMGG LGKTTLAQHVFNDEQVKAHFGVRLWVSVSGSLDVRKIITGAVGTGDSDDQLESLKKKLEGKIEKKKYLLVLDDVWDGEVGKDDGENWDRLKELLPRDAVG SKIVVTTRSHVIANFTRPIEPHVLKGLSEDESWELFRRKAFPQGQESGHVDERNIKEEIVGRCGGVPLVIKAIARLMSLKDRAQWLSFILDELPDSIRDD NIIQTLKLSYDALPSFLKHCFAYCSLFPKGHKIDIKYLIRLWIAQGFVSSSNSGRRCIEIVGLKCFESLLWRSFFHEVEKDRFGNIKSCKMHDFMHDLAT HVAGFQSIKVERLGNRISELTRHVSFDTELDLSLPCAQRLRTLVLLQGGKWDEGSWESICREFRCLRVLVLSDFGMKEASPLIEKIKHLKYLDLSNNEME ALSNSVTSLVNLQVLKLNGCRKLKELPRDIGKLINLRHLDVGCYRDGDLCQNLEYMPRGIGKLTSLQTLSCFVVAKKRSPKYEMIGGLDELSRLNELRGR LEIRAKGYEGGSCISEFEGAKLIDKKYLQSLTVRWDPDLDSDSDIDLYDKMLQSLRPNSSLQELIVEGYGGMRFPSWVSNLSNLVRIHLERCRRLTHIPP LHGIPSLEELNIVGLDDLEYIDSEGVGGIGGSTFFPSLKTLVIKHCRRLKGWWKRWSRDEMNDDRDESTIEEGLIMLFFPCLSSLSIVVCPNLTSMPLFP TLDEDLNLINTSSMPLQQTMKMTSPVSSSSFTRPLSKLKILFMYSIYDMESLPEVGLQNLSSLQSLSICECSRLKSLPLPDQGMHSLQKLLIFDCRELKS LSESESQGMIPYLPSLQRLRIEDCSEELSRRTRGWGKEREEEWPPNIKHIPDIGIDGYYIQKEGRYVKGEGLRWHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	1.41	0.9328
AT2G30230			unknown protein		Potri.006G076500 [exp]	4.47	0.9108
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	4.58	0.8876
AT4G31980			unknown protein		Potri.003G209000 [exp]	5.74	0.8796
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	6.00	0.8477
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	6.32	0.8976
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	6.48	0.8892
AT3G12970			unknown protein		Potri.005G098300 [exp]	7.74	0.8669
AT5G57340			unknown protein		Potri.018G090000 [exp]	8.48	0.8820
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	9.79	0.8825

Compare expression of checked genes

Potri.006G271800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.