Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGA-II24.65
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 236 / 6e-66 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 204 / 6e-55 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 182 / 7e-48 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G05400 177 / 5e-46 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 176 / 6e-46 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 175 / 2e-45 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G63020 173 / 6e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 172 / 1e-44 RFL1 RPS5-like 1 (.1) AT1G12280 167 / 5e-43 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G63350 166 / 1e-42 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420000 [exp] 407 / 5e-126 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G422800 [exp] 410 / 6e-125 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 403 / 6e-125 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 399 / 6e-122 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 395 / 1e-121 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 394 / 1e-121 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 394 / 6e-121 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 393 / 1e-120 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429430 [exp] 392 / 2e-119 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 83 / 6e-16 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10041243 [exp] 79 / 8e-15 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 74 / 2e-13 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 72 / 1e-12 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 72 / 2e-12 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 70 / 7e-12 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 68 / 2e-11 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 67 / 4e-11 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 66 / 2e-10 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 64 / 3e-10 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.006G273200.3 pacid=42769570 polypeptide=Potri.006G273200.3.p locus=Potri.006G273200 ID=Potri.006G273200.3.v4.1 annot-version=v4.1 ATGGCTGTTGATATTGTGATTTCCGTCATTGGGAAGATTGGAGAGTTCATGGTTGAGCCAATCGGACGAAAATTTGAATATTTAATTCACTACAACAGCA ACATGGAGACTCTCAAAGATCAAGTTCAACTACTAGAGGAAGTGAGAAAAGATGTCCAGGGATCAGTTGACGCAGCAATAGCGAAGGGTGAAACAATAAA AAATGAGGTTAGAAACTGGATGTCGAGAGTTGATGGAGTCATCTTGGAGGCTAGGAAAATTTTGGAAGATGATGCCGTTCCAAACAAGAGGTGGTTTCTT GATTTGGCTTCACGCTGTCGCCTAAGCAGAGAATCAGAAAACAAAATAACAGCAATCGCAAAGATAAAAGTAGATGGGCAGTTCGATAATGTTTCCATGC CTGCAGCTCCCCCAGAAATAGTGTCTCAAGATTTTGTTATTTTTGAGAGCACTAGATTGGCTATAATGGAAATCATGGAGGCATTGGAGGGCAATATAAT CAATTTTATCGGGATATATGGGATGGCTGGTGTCGGTAAAACGACTTTAGTCAAAGAAATTGAAAGAAGGGCTAAAGAAGATATGCTTTTCGATGCTGTT GTGATGGCTGTAGTGTCACGTACTGTTGAAGTGAAAAACATCCAGCAGCAGATAGCAGATATGTTGGGCTTCAAGTTCGACGAGAAAAGAGAACAAGGAA GAGCCGGTCGGTTGCATGCTAGATTGAAGAATGTGGATAAGATCCTTATTATCTTGGATGATATTTGGGACGCCCTTGATCTTGCTGCCATAGGCATTCC ATTTGGGGATGATGATCATCAAGATCCTGAAAATGTGAATTGTAAAGTTCGTAAGATTGTGGTCACAACACGATGCAGACTAGTATGCAATTCTATGACC ACAGGAATTGAGACTTCGAAGATCATCCATCTAAATGCTTTATCTGAAAATGAATCATGGGGCTTGCTTAAGATGAATACTGGTGAGGTTATCGACTCTC CCGAATTGAATTCCGTGGCAAAGAAGGTCTGCGGAGAATGCGGGGGTTTGCCCATAGCCCTTGTTAATGTGGGAAGGGCAATGAGAGACAAAGCCCTGGA AGAATGGGAAGAAGCTGCTCTAGCACTTCAGAAACCAATGCCTTCCAACATTGAGGGCACGGACGAAATCGTGTATAAGTGCCTTAAGCTAAGCTATGAC CACCTGAAAAATCGGGAAGCAAAGTCAATGTTCTTGCTTTGCTGTTTATTTCCGGAGGATTACAACATCTGTATAGAGGTTCTAGTGAGATACGGGATTG GACTGGAAATGTTTAAAGATGTTCTGACTATACAGGAGGCAAGGAGGCGAGCACATTCTATCACAAAAAATCTCAAAGATTCATGTCTGTTGTTAGCAGG CAATGAAACAGGATGCATCAAAATGAACAATGTTGTCCGTGATGTAGCAAAAACAATTGCATCTGATATTTACTTCGTGAAAGCTGGGGTGAAGTTGATG GAGTGGCCAAATGCGGAAACTTTGAAGCATTACACTGGGATATCAGTAATGTACAATCAGATAAATGGATACCCTGCTTCCTGGGACTGCTCAGACCTCC AGATATTGTTGATGCAAGGCAATTGTATTGAACAGCCTATGCCAGATGGAGTCTTCAAAGGGATGACAGCCCTTAAAGTTTTTGATCAGAGTGATATTAT CTCGAAAGGCGATCCTTACTTTTCGAGGAAATTGGAACCAGGATTTTCTTATCTAACAAGTCTTCGGACATTAATCATTAAAAATTGCAGGATTGCTGCC CCAGCTGCTATTGGGAATATGAAAATGCTTGAGGTTCTAAGCTTGGCAAATTGCAAGCTCCTAGACCTACCACAGGAAATAGGGGAGTTGACAAATATAA GGTTGCTTGATTTGGAAGACTGCCATCATAGCAGAAAAAAACTCAATGCCATATTTCCTCCAAATGTCATCTCAAGGTGGTCCAGATTAGAAGAGCTGTA CTCAAGTTCTTTCATGAAATACACCAGAGAGCACATAGCTGAGCTGAAATCACTGTCCCACTTAACCACCTTAATGATGGAGGTCCCTGATTTTGGATGT ATACCTGAAGGTTTCAGTTTTCCTGAATTGGAGGTTTTCAAAATAGCCATACGCGGCTCTGTCCATCACAAGCAATCAAATTATCTTGAGGTTTGTGGTT GGGTCAATGCCAAGAAATTTTCGCGATTCCTTCACTAG
AA sequence Show only first row Show all	>Potri.006G273200.3 pacid=42769570 polypeptide=Potri.006G273200.3.p locus=Potri.006G273200 ID=Potri.006G273200.3.v4.1 annot-version=v4.1 MAVDIVISVIGKIGEFMVEPIGRKFEYLIHYNSNMETLKDQVQLLEEVRKDVQGSVDAAIAKGETIKNEVRNWMSRVDGVILEARKILEDDAVPNKRWFL DLASRCRLSRESENKITAIAKIKVDGQFDNVSMPAAPPEIVSQDFVIFESTRLAIMEIMEALEGNIINFIGIYGMAGVGKTTLVKEIERRAKEDMLFDAV VMAVVSRTVEVKNIQQQIADMLGFKFDEKREQGRAGRLHARLKNVDKILIILDDIWDALDLAAIGIPFGDDDHQDPENVNCKVRKIVVTTRCRLVCNSMT TGIETSKIIHLNALSENESWGLLKMNTGEVIDSPELNSVAKKVCGECGGLPIALVNVGRAMRDKALEEWEEAALALQKPMPSNIEGTDEIVYKCLKLSYD HLKNREAKSMFLLCCLFPEDYNICIEVLVRYGIGLEMFKDVLTIQEARRRAHSITKNLKDSCLLLAGNETGCIKMNNVVRDVAKTIASDIYFVKAGVKLM EWPNAETLKHYTGISVMYNQINGYPASWDCSDLQILLMQGNCIEQPMPDGVFKGMTALKVFDQSDIISKGDPYFSRKLEPGFSYLTSLRTLIIKNCRIAA PAAIGNMKMLEVLSLANCKLLDLPQEIGELTNIRLLDLEDCHHSRKKLNAIFPPNVISRWSRLEELYSSSFMKYTREHIAELKSLSHLTTLMMEVPDFGC IPEGFSFPELEVFKIAIRGSVHHKQSNYLEVCGWVNAKKFSRFLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.006G273200 [exp]	0	1	Pt-RGA-II24.65
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.007G123400 [exp]	8.83	0.7332
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	9.79	0.7368
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	32.44	0.6887
					Potri.001G172000 [exp]	34.91	0.6740
					Potri.019G132450 [exp]	40.59	0.6817
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Potri.007G023100 [exp]	41.35	0.5822
					Potri.001G302201 [exp]	41.41	0.7114
					Potri.001G422000 [exp]	53.68	0.6749
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	60.79	0.6424
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.004G178900 [exp]	68.41	0.6758

Compare expression of checked genes

Potri.006G273200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.