Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 363 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 325 / 6e-93 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 259 / 1e-72 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46530 213 / 3e-57 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G59218 206 / 3e-54 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 206 / 3e-54 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58390 202 / 2e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 201 / 3e-53 NB-ARC domain-containing disease resistance protein (.1) AT1G58602 202 / 8e-53 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT3G46710 197 / 6e-52 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 1614 / 0 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 1576 / 0 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 1356 / 0 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 509 / 4e-162 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 503 / 1e-159 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 496 / 2e-157 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 495 / 3e-157 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 481 / 4e-152 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 473 / 1e-148 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 602 / 0 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 595 / 0 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 572 / 0 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 546 / 2e-176 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 543 / 8e-176 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 388 / 1e-116 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 370 / 5e-109 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 367 / 7e-108 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 363 / 2e-106 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 355 / 7e-104 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.006G273900.1 pacid=42769079 polypeptide=Potri.006G273900.1.p locus=Potri.006G273900 ID=Potri.006G273900.1.v4.1 annot-version=v4.1 ATGGCTGAACTTGTACTCTTCAATATTGCGGAGGAAATAGTAAAGAAACTGGGTCCACTAGCTACCCAGGAGATTGCACTGTGGTGGGGTGTCAAAGATC AGCTAAGCAAGCTCATGAGCACGGTTACCAGAATTAAGGGTGTCCTTCACGATGCTGAGGAGCAGGTGCAGAAACCACCCGCTCAACTTGAAGACTGGCT CGGGAAGCTGCAAGAAGCGGTCTATGATGCTGAAGATTTGCTGGATGATTTTTCAACAGAAGTGCAGCGAAAAAGATTGATGTCCCGAAATAAAATACCG AGGGAGGTACGTACATTCTTCTCAGGGTCAAACCAACTTGTGTATGGTTGGCAGATGGGTCATAAAGTTAAGGAACTTAGGCAGAGGCTAGATGAGATTG TTTCTGAGAGTGAAAAATTTCACTTTGAGGTTCGTTATGAGGAGAAAGCTTCTTTGACTATGATTAGAGAGGCAACTACCTCTTCTGAACCTGAGATATT TTTCGGGAGAGAAGATGAAAAAAAGAAAGTTATGAGCTTTCTGTTGAATCCCAACGATAAGATTGAGAGTGTTTCTGTCATCTCAATAGTTGGAATGGGC GGGTTGGGAAAGACCACATTTGCTCAGAGTATTTTCAATGATGAACAAGTTAATTTGCATTTTGGTCTGAAACTCTGGGTCAGTGTCTCGGGTGGTTTTG ATGTCAAAAAGATACTCAAAGATGTATCAGAGGCTGCAGGTATTAGTCAAGTTTCTGATCAGTTAGAGAGTCTGAAAAATGAACTTAAGAAAAAAATAGA AAATAGAAAATACCTGCTTGTATTAGATGATGTGTGGGATAATAAGGATGGTCGAGATGGTGAAAAGTGGGATAGTTTGAAGCAGTCCTTACCACATGAG ACTGATAGAGGAAACAAGATGATAATAACTACACGTTCTGATACAATTGCAAATTTAACAAGCAAAATACCACTTGCGTTAAAAGGCCTTTCTGAAAAGG ACTCGTGGTCTCTTTTCTCGAACAAGGCTTTTGGTCCAGGTCAAGAGTCAAATTACATAGACGAAAAAATAAAAAAAGAGATTGTAGTGAGGTGTCAGGG AGTTCCTTTGGTCATAAAGGCAATTGCAAGGTTAATGTATTATAAAGATAGAGTCCAGTGGTTGTCCTTCATCAAACAAGAACTTCCAAATAGGGTCAAA GATGATAACATCATACATACCCTTAAGTTAAGCTACGATCCTCTTCCATCATATATGAAGCATTGCTTTGCATACTGTAGCTTATTCCCGAAAGGTCATG AAATAGATGTAAAATCATTGATTCGACTTTGGGTTGCACAAGGGTTTGTTAGCTCTTCGAATTTGGGTGAGTGCTTAGAAATTGTTGGTCTTAGGTGCTT TGAGAATTTATTGTGGAGGTCCTTCTTCCACGAAGTGAAAAAGGATAGATTGGGGAACATAGAAAGTTGCAAAATGCATGATTTTATGCATGATCTTGCA ACCCATGTCGCTGGTTTTCAGAGCATCAAAGTGGAGCGTCTAGGAAATAGGATTAGTGAATTGACTCGGCACGTGTCATTTGACACGGAATTAGATTTGT CTTTGCCTAGTGCACAACGTCTAAGAACACTTGTATTATTGCAAGGTGGAAAATGGGATGAGGGGTCATGGGAGTCTATTTGTCGAGAGTTTAGGTGTTT ACGTGTGCTTGTTTTGAGTGATTTTGTAATGAAGGAAGTGTCACCTCTCATTCAAAAGCTCAAGCATCTGAAATATCTTGATCTTTCGAATAATGAGATG GAGGCGCTTTCTAATTCTGTCACCAGTCTGGTAAATTTGCAAGTGCTCAAACTCAGTGGTTGTAGGAAACTTAAGAAACTACCTAGGGATATTGGCAAGC TGATCAATCTGAGGCATCTTGATGTTGGTTGCTATCTTGATCGTGATTTATGTGAGGATTTAGAGTATATGCCTCGTGGGATTGGGAAAATAACTAGTCT ACAGACGTTGTCATGTTTTGTGGTTGCAAAAAAAAAGAGTGCTAAATCTGAGATGATAGGTGGATTGGATGAGTTGAAAATGTTAAATGAATTGAGAGGG AGCCTAGAAATAAGAGTAAAGGGATATGAGGGTGGTTCTTGTGTATCAGAATTTGAAGGAGCTAAATTGATCGATAAAGACTATCTCCAGTCGTTGACCG TATGGTGGGACCCAGAGCTGGATAGTGACTCAGATATTGATTTGTATGATAAAATGTTGCAAAGCCGCCAGCCAAACTCGAGTCTTCAAGAGTTGAGAGT TGAAGGCTATGGAGGTATGAGGTTTCCTAGTTGGGTTTCAAATCTCTCAAATCTTGTAAGGATTTTTGTAGACCGTTGTAGAAGACTTAAGCATATCCCT TCCTTAGATGGAATCCCTTCTCTTGAAGAATTAAGGATTGAGGGATTGGATGATTTGGAGTACATAGATAGTGAGGGGGTTGGAGGAAAAGGAGCGTCGA TGTTTTTCCCATCCTTAAAGAGACTTGATATCTTTGATTGTGGTAGACTGAAGGGATGGTGGAAGAGATGGAGTAGAGATGAGATGAATGATGATAGTGA TGAGTCAACAATAGAAGAAGGGTTGAGAATGCTCTGTTTTCCACGTCTTTCTTCCTTGGGCATTTCTTATTGTCCAAATCTGACTTCAATGCCGTTGTTT CCAACTCTCGATGAAGATCTTTATTTGGTCAACACTAGTTCAATGCCATTACAGCAGACAATGAAGATGACATCACCAGTCTCTTCTTCTTCTTCTTCTT CTTCATTTACCCGTCCTCTCTCCAAATTGAAGAGTCTATATATGCATTCAATTGATGACATGGAATCTCTTCCGGAAGTAGGGCTGCAAAATCTCTCTTC TCTTCAACAGCTATGGATTTGGGGATGCGGAAGATTGAAGTCTCTGCCACTGCCTGATCAGGGGATGCATTCTCTTCAGAAATTAGAAGTCATTTTATGC AGAGAATTGAAGTCGCTATCCGAATCTGAATCTCAAGGGATGATACCCTACCTTCCCTCTTTGCAATTCTTAAGAATCGATGGCTGCAGTGAAGAGCTGA GGGGAAGAACAAGAGGATGGGGAAAGGAGAGCGAGGAGGAGTGGCCTATCATTAAACACATTCCAGATATTGTAATTGATTGGAACTACATTCAAAAGGA GGGTCGCTATGTAAAGGGTGAAGGATTGGAATACAATCCTTTCTAA
AA sequence Show only first row Show all	>Potri.006G273900.1 pacid=42769079 polypeptide=Potri.006G273900.1.p locus=Potri.006G273900 ID=Potri.006G273900.1.v4.1 annot-version=v4.1 MAELVLFNIAEEIVKKLGPLATQEIALWWGVKDQLSKLMSTVTRIKGVLHDAEEQVQKPPAQLEDWLGKLQEAVYDAEDLLDDFSTEVQRKRLMSRNKIP REVRTFFSGSNQLVYGWQMGHKVKELRQRLDEIVSESEKFHFEVRYEEKASLTMIREATTSSEPEIFFGREDEKKKVMSFLLNPNDKIESVSVISIVGMG GLGKTTFAQSIFNDEQVNLHFGLKLWVSVSGGFDVKKILKDVSEAAGISQVSDQLESLKNELKKKIENRKYLLVLDDVWDNKDGRDGEKWDSLKQSLPHE TDRGNKMIITTRSDTIANLTSKIPLALKGLSEKDSWSLFSNKAFGPGQESNYIDEKIKKEIVVRCQGVPLVIKAIARLMYYKDRVQWLSFIKQELPNRVK DDNIIHTLKLSYDPLPSYMKHCFAYCSLFPKGHEIDVKSLIRLWVAQGFVSSSNLGECLEIVGLRCFENLLWRSFFHEVKKDRLGNIESCKMHDFMHDLA THVAGFQSIKVERLGNRISELTRHVSFDTELDLSLPSAQRLRTLVLLQGGKWDEGSWESICREFRCLRVLVLSDFVMKEVSPLIQKLKHLKYLDLSNNEM EALSNSVTSLVNLQVLKLSGCRKLKKLPRDIGKLINLRHLDVGCYLDRDLCEDLEYMPRGIGKITSLQTLSCFVVAKKKSAKSEMIGGLDELKMLNELRG SLEIRVKGYEGGSCVSEFEGAKLIDKDYLQSLTVWWDPELDSDSDIDLYDKMLQSRQPNSSLQELRVEGYGGMRFPSWVSNLSNLVRIFVDRCRRLKHIP SLDGIPSLEELRIEGLDDLEYIDSEGVGGKGASMFFPSLKRLDIFDCGRLKGWWKRWSRDEMNDDSDESTIEEGLRMLCFPRLSSLGISYCPNLTSMPLF PTLDEDLYLVNTSSMPLQQTMKMTSPVSSSSSSSSFTRPLSKLKSLYMHSIDDMESLPEVGLQNLSSLQQLWIWGCGRLKSLPLPDQGMHSLQKLEVILC RELKSLSESESQGMIPYLPSLQFLRIDGCSEELRGRTRGWGKESEEEWPIIKHIPDIVIDWNYIQKEGRYVKGEGLEYNPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.006G273900 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Potri.010G232800 [exp]	2.44	0.8033
					Potri.004G011600 [exp]	3.87	0.8298
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	4.00	0.7866
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.011G150900 [exp]	5.00	0.8045
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.010G090301 [exp]	5.38	0.7359
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.003G151300 [exp]	7.07	0.7414
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	7.54	0.7508
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	10.39	0.7817
					Potri.010G252850 [exp]	13.67	0.7566
					Potri.001G426750 [exp]	16.73	0.7231

Compare expression of checked genes

Potri.006G273900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.