Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 345 / 2e-100 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 314 / 8e-88 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 231 / 7e-63 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46730 204 / 8e-54 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 204 / 1e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 195 / 6e-51 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 182 / 1e-46 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G59218 181 / 4e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 181 / 4e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58602 177 / 6e-45 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272066 [exp] 1498 / 0 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 1480 / 0 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 1294 / 0 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 449 / 4e-137 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 444 / 6e-136 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 444 / 1e-135 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 439 / 6e-134 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 433 / 4e-132 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 429 / 6e-130 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 568 / 0 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 536 / 2e-170 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 504 / 1e-155 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 486 / 1e-151 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 486 / 3e-151 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 371 / 7e-109 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 349 / 5e-100 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10008584 [exp] 328 / 1e-97 AT3G14470 186 / 2e-49 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 336 / 3e-95 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 326 / 6e-92 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.006G275800.4 pacid=42768488 polypeptide=Potri.006G275800.4.p locus=Potri.006G275800 ID=Potri.006G275800.4.v4.1 annot-version=v4.1 ATGGCTGAAGGTGTGCTCTTCAATATTGCGGAGGAAATAATAAAGACATTAGGTTCCCTAACTGCTCAGGAGGTTGCACTATGGTGGGGGCTCAAAGATC AATTGCGGAAGCTCAAAGACACAGTTACCAGGATTAAGGCTGTGATTCAAGACGCTGAGGAGCAGGCACAAAAACAGAACCATCAAATCGAAGTCTGGCT CAAGAAGCTGCGGGAAGCTGTATATGATGCAGAGGATTTGCTGGACGATTTCTCAACGCAAGTTCTGCGGAAACAGTTGATGTCTGGGAAAAGAGTATCG ACGGAGGTACGCCTTTTTTTCTCAAGATCAAACCAATTTGTGTATGGTTTACGGATGGGTCATAGAGTTAAAGCACTTCGAGAGAGACTAGATGACATTG AAATTGACAGTAAAAAATTCAACTTTGATGTTCGTGGTGAGGAGAGAGCTTCTTTGACCACTGTCAGGGAGCAAACTACCTCATCTGAACCTGAAAAAAT AGTTGGGAGAGAGAGTGACAAAGAGGCAGTTAAAAGTTTTCTGATGAATTCCAACTATGAACATAATGTTTCTGTCATCTCCGTAGTTGGAATGGGAGGG TTGGGGAAGACCACACTAGCTCAACATGTTTACAATGATGAGCAAGTTAAGGCGCACTTTGGTGTGAGACTCTGGGTAAGTGTCTCAGGCAGCTTAGATG TTAGAGAGATTATCAAAGGGGCTGTAGGTACTAGAGATTTTGATGATCAGTTAGAGAGTCTGAAAAAAGAGTTGGAAGAGAAAATAGGAAAAAAGAAGTA TCTTCTTGTATTAGATGATGTGTGGGATGGTGATGATGGTAAGGATGATGGTGAAAATTGGGATAGGTTGAAGGAGTTGTTACCATCTGATGCAGTAGGA AGTAGGATAGTGGTAACTACACGTTCTCATGTAATTGCCAAATTCACAAGCACAATAGAACCACATGTTTTAAAAGGTCTGTCTGTAGATGAGTCATGGG AACTGTTTAGAAGAAAGGCATTTCCTCAAGGCCAGGAGTCGGGTCATGTAGATGAGAGAATTAGAAAAGAGATTGTAGAGAGGTGTTGTGGAGTTCCTTT GGTCATAAAGGCAATTGCGAGGTTAATGTCTTTGAAAGATAGAGCCCAGTGGTTGCCCTTTATCCAACAAGAACTTCCAAATAGGGTCAAAGATGATAAC ATCATAGATACCCTTAAGTTAAGCTACGATCCTCTTCCATCATATATGAAGCATTGCTTTGCATACTGTAGCTTATTCCCAAAAGGTCATAGGATTGATG TGAAGTTATTGATTCGACTTTGGATTGCACAAGGGTTTGTTAGCTCTTCAAATTCAGGTGGTAGGTGTCTTGATATTGTTGGTCTTAGTTGCTTTGAGCA TTTACTGTGGAGGTCATTCTTTCACGAAGTGGAGAAGGATGGTTTAGGTAACATAGAAAGTTGCAAAATGCATGATTTTATGCATGATCTTGCAACCCAT GTCGCTGGTTTTCAGAGCATCAAAGTGGAGCGTGGAGGAAATAGGATTAGTGAATTGACTCGGTACGTGTCATTTGACATGGAATTGGATTTGTCCCAAC AAATTCCAATTCTTTTGCCTTGTGCAAAAAGTCTAAGAACATTTATATTATTTCAAGGCGGCAAATGGGATGAGGGGTCATGGAAGTCTATTTGTCGAGA CTTTAGGCTTTTACGTGTGCTTGTTTTGAGTCATTTGGGAATGAAGGAAGTGCCACCTCTCATTGAAAATATCAAGCATCTGAAATATCTTGATCTTTCT AATAATGAGATGAAGGCGCTTCCTAATTCTGTCACTAGTCTGGTAAATTTGCAAGTGCTCAAGCTCAATGGTTGTGATAACCTTAAAGCACTACCAAGAG ATATTAGTAAGCTGATCAATCTGAGGCATCTTGATGTTGGTTGCACTCTTGATGAAGATTTATGTGAAAATTTAGAGTATATGCCTCGTGGGATTGAAAA ATTAACTAGTCTACAAACGTTGTCATGTTTTGTGGCTGCTAAAAATAGGAGTTCTAAATCCAAGAAGGTTGGTGGATTGGATGAGTTGAGTGAATTAAAT GAATTGAGAGGGAGGCTAGAAATAAGAGTAAAGGGATATAAGAGCAGTTCTTGTATATCAGAATTTAAAGGAGCAAAATTGATAGAGAAAAAATATCTTC AGTCGTTGACCATATGGTGGGACATACAGGAAGATCTTATTTCAGATATTTTATTGTATGATAAAATGTTGGAAAGCCTCGAGCCAAACTTGAGTCTTCA AGAGTTGAAAGTGAGAGGCTATAAAGGCATCAGGTTTCCACATTGGCTTTCAGAACTCTCAAATCTTGTAAGCATTCATCTAATATTCTGTCCAAGACTT AAGCATATCCCTCCCTTAGATAAAATCCCTTCTCTTAGAGAAATGTTGATTATGCATTTGAATAATTTGGAGTACATGGATAGCGAGGGGGATGGAGGAA GAGGAGTTTCAGGATTTTTCCCATCTTTAAAGAAACTTAGCATCTATAATTGTCCTAATCTGAAGGGATGGTGGAAGAAGAGTAGAGATGAGAAGAGTGA TGATAATGATGAGTCATTAAAAGAAATGCTATGTTTTCCATGTCTTTCTTCCTTGAGCATTGTTGATTGTCCAAACTTGACTTCAATACCGTTTTTTCAA ACTCTCTCAATTCTCTTTTTGTTGAGAGCTAGTTCAATACCATTACAGCAGACAATGGAGATGACATCACCAGTCTCTTCTTCTTCTTCTTCCCGTCCTC TCTCCAAATTGAAGAAACTATATATTTATTTCATTGATGATATGGAATCTCTTCCAGAAGTAGGGCTGCAAAATCTCTCTTCTCTTCAACAACTATCGAT TAGGGGATGCTCAAGATTGAAGTCTCTGCCACTGCCTGATCAGGGGATGCCTTCTCTTCAGAAATTAAATATCATCAGTTGCAAAAAATTAGAGTATCTA TCTCAATCTGGATCGCAAAGGATACCCTACCTTACCTCTTTACAAGAATTAGAAATATCTTACTGTAGTGGAGAGTTGAGAGTGATAGAATATCGAGGCA CGAGGTTTCCAAGTTGGCTTTCACATCTCTCAAATCTGGTAAGGGTTCATCTACGACATTGTAGAAGACTTGAGCATCTCCCTCCCTTACATGGAATCCC TTCTCTTGAAGAATTGTCAATCGCATATATGGATAGTTTGGAGTACATAGATAGTGAGAGGGTTGGAGGAAAAGGAGTGTCGATGTTTTTCCCATCTTTA AGGAAACTTCGTATCTTTAGTTGTGGTAGACTGAAGGGATGGAGGAAGAAGAGTAGAGATGAGATGGATGATGATAGTGATGAGTCAGCAAAAGAAGGGT TGATAATGCTCTGTTTTCCACGTCTTTCTTCCTTGAGCATTGTTGATTGTCCAAAGCTGACTTCAATGCCGTTGTTTCCAACTCTCGATGAAGATCTTTA TTTGTGGAGGACTAGTTCAATGCCATTACAGCAGACAATGGAGATGACATCACCAGTCTCTTCTTCTTCTTCTTCATCTATCCGTCCTCTCTCCAAATTG AAGAATCTAGAAATTTATATCATTGATGATATGGAATCTCTTCCGAAAGTAGGGCTGCAAAATCTCTCTTCTCTTCAACAGCTATTTATCTATGGATGCG AAAGATTGAAGTCTCTGCCACTGCCTGATAAGGGGATGCCTTCTCTTCAGAAATTACTTATCAGGCATTGCAGAGGATTGAAGTCGCTATCTGAATCTGA ATCTCAAGGGAGGATACCCTTCCTTCCCTCTTTGCAAGAATTACTACTAAATGGCTGCAGTGAAGAGCTGAGCGGAAGAACAAGAGGATGGGGAAAGGAG AGCGTGGAGGAGTGGCCTATCATTAAACACATTCCATATATTTTTATCGAGGACGGCTACATTCAAAAGGAGGGTCGCTATGTAAAGGGTAGCTTACATA AAGGCCATTAG
AA sequence Show only first row Show all	>Potri.006G275800.4 pacid=42768488 polypeptide=Potri.006G275800.4.p locus=Potri.006G275800 ID=Potri.006G275800.4.v4.1 annot-version=v4.1 MAEGVLFNIAEEIIKTLGSLTAQEVALWWGLKDQLRKLKDTVTRIKAVIQDAEEQAQKQNHQIEVWLKKLREAVYDAEDLLDDFSTQVLRKQLMSGKRVS TEVRLFFSRSNQFVYGLRMGHRVKALRERLDDIEIDSKKFNFDVRGEERASLTTVREQTTSSEPEKIVGRESDKEAVKSFLMNSNYEHNVSVISVVGMGG LGKTTLAQHVYNDEQVKAHFGVRLWVSVSGSLDVREIIKGAVGTRDFDDQLESLKKELEEKIGKKKYLLVLDDVWDGDDGKDDGENWDRLKELLPSDAVG SRIVVTTRSHVIAKFTSTIEPHVLKGLSVDESWELFRRKAFPQGQESGHVDERIRKEIVERCCGVPLVIKAIARLMSLKDRAQWLPFIQQELPNRVKDDN IIDTLKLSYDPLPSYMKHCFAYCSLFPKGHRIDVKLLIRLWIAQGFVSSSNSGGRCLDIVGLSCFEHLLWRSFFHEVEKDGLGNIESCKMHDFMHDLATH VAGFQSIKVERGGNRISELTRYVSFDMELDLSQQIPILLPCAKSLRTFILFQGGKWDEGSWKSICRDFRLLRVLVLSHLGMKEVPPLIENIKHLKYLDLS NNEMKALPNSVTSLVNLQVLKLNGCDNLKALPRDISKLINLRHLDVGCTLDEDLCENLEYMPRGIEKLTSLQTLSCFVAAKNRSSKSKKVGGLDELSELN ELRGRLEIRVKGYKSSSCISEFKGAKLIEKKYLQSLTIWWDIQEDLISDILLYDKMLESLEPNLSLQELKVRGYKGIRFPHWLSELSNLVSIHLIFCPRL KHIPPLDKIPSLREMLIMHLNNLEYMDSEGDGGRGVSGFFPSLKKLSIYNCPNLKGWWKKSRDEKSDDNDESLKEMLCFPCLSSLSIVDCPNLTSIPFFQ TLSILFLLRASSIPLQQTMEMTSPVSSSSSSRPLSKLKKLYIYFIDDMESLPEVGLQNLSSLQQLSIRGCSRLKSLPLPDQGMPSLQKLNIISCKKLEYL SQSGSQRIPYLTSLQELEISYCSGELRVIEYRGTRFPSWLSHLSNLVRVHLRHCRRLEHLPPLHGIPSLEELSIAYMDSLEYIDSERVGGKGVSMFFPSL RKLRIFSCGRLKGWRKKSRDEMDDDSDESAKEGLIMLCFPRLSSLSIVDCPKLTSMPLFPTLDEDLYLWRTSSMPLQQTMEMTSPVSSSSSSSIRPLSKL KNLEIYIIDDMESLPKVGLQNLSSLQQLFIYGCERLKSLPLPDKGMPSLQKLLIRHCRGLKSLSESESQGRIPFLPSLQELLLNGCSEELSGRTRGWGKE SVEEWPIIKHIPYIFIEDGYIQKEGRYVKGSLHKGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	0	1
					Potri.006G271901 [exp]	2.82	0.9893
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	5.29	0.9857
					Potri.004G184650 [exp]	7.74	0.9824
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	8.12	0.9821
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203100 [exp]	11.70	0.9506
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	12.96	0.9727
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	13.85	0.9815
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	19.89	0.9512
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.004G184600 [exp]	21.90	0.9708
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G098850 [exp]	22.44	0.9618

Compare expression of checked genes

Potri.006G275800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.