Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22640 186 / 7e-58 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 180 / 5e-56 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G09460 181 / 6e-56 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G35550 181 / 1e-55 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT2G16720 178 / 2e-54 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G38620 177 / 5e-54 MYB AtMYB4 myb domain protein 4 (.1) AT3G13540 175 / 1e-53 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G34990 174 / 9e-53 MYB ATMYB32 myb domain protein 32 (.1) AT3G23250 174 / 1e-52 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT5G14750 171 / 1e-52 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005300 [exp] 316 / 7e-107 AT1G22640 186 / 9e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.006G221800 [exp] 209 / 2e-66 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.018G049401 [exp] 199 / 2e-62 AT2G16720 190 / 4e-59 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049600 [exp] 199 / 2e-62 AT2G16720 192 / 4e-60 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.006G221500 [exp] 194 / 7e-61 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.014G100800 [exp] 194 / 1e-60 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.018G049200 [exp] 199 / 2e-60 AT2G16720 189 / 8e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144200 [exp] 189 / 1e-58 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 186 / 1e-57 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 201 / 4e-63 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 201 / 9e-63 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000411 [exp] 180 / 5e-55 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 178 / 3e-54 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 178 / 3e-54 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 176 / 2e-53 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10041888 [exp] 172 / 1e-52 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10028435 [exp] 172 / 1e-52 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10018418 [exp] 172 / 3e-51 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033889 [exp] 171 / 3e-51 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G275900.2 pacid=42768459 polypeptide=Potri.006G275900.2.p locus=Potri.006G275900 ID=Potri.006G275900.2.v4.1 annot-version=v4.1 ATGGGAAGAAAGCCGAGGTGCTCAGCGGATGGTATGAACAAAGGAGCATGGACACCTCTTGAAGATGAAATGCTTGTGGATTATGTCAAGATCCATGGTG AAGGTAAATGGAGCAATATTGTCAAAGAAACAGGACTTAAGAGATGTGGGAAGAGTTGCAGGCTTCGCTGGATGAATTATCTGAGACCTGATATTAAGAG AGGCAACATCTCAGATGATGAAGAAGACCTCATTATCAGGCTGCATAAGCTCCTAGGCAACAGATGGTCTCTGATAGCAGGAAGGCTTCCGGGACGAACA GATAACGAAATAAAGAATTATTGGCACACCAATATCGCTAAGAAGGCACAACATTCGCAATCTCGGAAGCAGCCTGGAGTTGATAGGAAACAAATAGCAT CAGGATCTGAAAATGGGGCAACAGCATCAAATTTCAAGAATCAGACCATTGAATCACAGTACTGCACTACTGGGGTGGTTGTTCCCTCTACTGCATTACA AGAAAACAATATGGCTCAAGATCATCTAGTTAGTACTCTTGCAATGGCACCATCCAACACACATCATGAAAATGAATCATCAAGCAAGGGGTTAGCATCT GGGGATAATGACAATTTGTCCAACATTTTGATGGATTTTCATTATATGGAAGACTTCTACAAGATTCTTGATTCAGACTTCCCAAAGTTAAGTGACCTCA ATGATATAACTGGTACTGCTAATCATTCCAATAATACCATACAGGTAGATGGTGATCATTATAGTGTGTCTATTAATGGATGCAATCCAAGAGAAATAGC AGGGTTTTCTGAATTGTTGGAGGCAGATTGGACTAGCAATAAATGCGTTCAAGCTGAACAAGGTTTTGATTTCATGTCATTGCTTTCATTTCTTGATTTA ACCGATGAGTAA
AA sequence Show only first row Show all	>Potri.006G275900.2 pacid=42768459 polypeptide=Potri.006G275900.2.p locus=Potri.006G275900 ID=Potri.006G275900.2.v4.1 annot-version=v4.1 MGRKPRCSADGMNKGAWTPLEDEMLVDYVKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRT DNEIKNYWHTNIAKKAQHSQSRKQPGVDRKQIASGSENGATASNFKNQTIESQYCTTGVVVPSTALQENNMAQDHLVSTLAMAPSNTHHENESSSKGLAS GDNDNLSNILMDFHYMEDFYKILDSDFPKLSDLNDITGTANHSNNTIQVDGDHYSVSINGCNPREIAGFSELLEADWTSNKCVQAEQGFDFMSLLSFLDL TDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	0	1
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	3.74	0.9958
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	5.83	0.9951
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141800 [exp]	5.91	0.9838
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.009G104600 [exp]	6.00	0.9945
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.006G141400 [exp]	6.78	0.9881
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	7.48	0.9943
					Potri.005G184800 [exp]	9.69	0.9635
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.014G135100 [exp]	11.48	0.9720
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	12.36	0.9932
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	12.64	0.9935

Compare expression of checked genes

Potri.006G275900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.