Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 452 / 1e-139 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 389 / 4e-115 transmembrane receptors;ATP binding (.1.2) AT1G27180 338 / 1e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72840 325 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 323 / 5e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 324 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 323 / 1e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 311 / 2e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 312 / 5e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 311 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G013900 [exp] 2111 / 0 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G011600 [exp] 1938 / 0 AT5G36930 492 / 1e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1930 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G283000 [exp] 1911 / 0 AT5G36930 460 / 8e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1906 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282600 [exp] 1888 / 0 AT5G36930 466 / 1e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1880 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 1773 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013450 [exp] 1751 / 0 AT5G36930 422 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 664 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 576 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 514 / 1e-166 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 466 / 2e-143 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 461 / 3e-142 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 397 / 4e-119 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 386 / 6e-115 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 376 / 3e-111 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 375 / 2e-110 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 361 / 7e-107 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.006G282200.1 pacid=42769359 polypeptide=Potri.006G282200.1.p locus=Potri.006G282200 ID=Potri.006G282200.1.v4.1 annot-version=v4.1 ATGGCTGCTGGGAAATATCAAGAATCCTACTCTTCACGGTTTTCTAATTGTAAATATCAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAAGAACT TTACCGACCACCTCTACAAGGCCCTGGTTCATGCAGGGTTTCATACATTTAGAGATGATGATGAAATTCGGAGAGGAAAGAATATAAGGCTGGAGCTCCA GAAGGCAATAAAACAATCAAAAATAGCGATAATCGTGTTCTCCAAAAACTATGCTTGGTCGAAATGGTGCCTCGATGAACTTGTAAAGATCATGGAACGT AAGAGGAATGCTGAATGCATAGTTTTCCCAGTATTCTATCATGTGGATCCATCTGAAGTCAGAAATCAAACTGGGAGCTTCGCTGCAGCATTTGTGGAAC ATGAAAAGCACTACAAGGAGGAGATGGAGCGGGTGAATGGGTGGAGGATTGCTTTGAAGGAAGTTGCAAATTTAGCTGGAATGGATTTAGGAGATGGGTA CGAGGCACAGTTTGTCCAATCTATTGTGGAGAATGTCTTAAAGAATTTGGATCCAAAAATATTTTATGTCCCCCTTCATTTCATTGGAAGAGATGCTTTA GTACAAGATATCAACTCATGGTTGCAAGATGGATCCCATGGTGCTGCCATTGCTTTACTCTATGGAATTGGTGGAGTTGGAAAGACAGCCATAGCTAAGA GTGTTTTTAACCAGAACTATTATAAATTTGAAGGAAAGAGCTTTCTATCAAATTTTAGGTCAAAGGATATAGTTTGCCTACAGAGGCAACTTCTGTTCGA CATCCTAAACAAGACTGTTGAGATAAATGATCCTGATGAAGGAATTCTGAAGATTAAGCATGCATTATGTTGCAGAAGAACTCTTATTGTTCTAGATGAT GTGGACAATAGGGACCAATTCAATAAAATCATTGTCATGCAAAATTGGCTTTGTAAAGGAAGTAAAATCATTGTAACAACCAGAAATAAGGGTTTGTTTT CAGCTAATGATATTCAGTGGATCCGGTACAAAGTTGAACTGCTAGATGATGAAAAATCACTTGAGCTTTTCAGTTGGAATGCCTTTGGACAAGCTAACCC TGTTGATGGTTTTGTGGAAGAATCTTGGAGAATAGTACATCATTGTAATGGACTTCCATTAGCTCTTGGAGTTATTGGCTCTTCATTGTCCGGAAAAGGA AGAGAAATATGGGAAAGCGCATTACAACAAATGGAAGTGATTCTTAATTTTGAAGTTCAAAAGGTTCTTCGAATAAGTTACGACTTTCTTGATGGTGATT ATCCGAAGAACTTATTCCTTGATATCGCATGTTTCTTCTATGGAATGGATGTGGATGATGCAGTTAGGATACTGGATAGGCTCGATAAAGGTGCAAGATT TGGGATTGACAATCTCATCGATAGATGTCTTGTTGAAATCAACAGTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGATATGGGTAGGGAAATTGCT CGTCAAGAATCACCCAAATGTCAAAGAATATGGCATCATGGGGATGCTTTTACAGTTTTGAAAGGAACTACTGATGCTGAAAAATTGCGTGGCCTTACCA TTGATATGCATGCATTAATGGAATATCATTATGCAGAAGTTGTCTGTACTGATTCAATGGTTTGTCGCAAGCGCCGCAGGCTTAACTTCTTTCAACAATG GCTTTCCGATTTTTTCGATGGGGGAAAATTACAAACTGGCCAAACAAGTTTGTTTCCCATCCTCAGCACGGATGCTTTTAGAAAGATGCCAGATGTAAAA TTTCTCCAACTAAACTACACTAATTTTCATGGAAGTTTTGAGCACTTTCCCAAGAATTTGATATGGTTATGTTGGCATGGATTGTCTTGGAGCTCCATAC CAAATCACGTATGCTTGGAGAAGCTGGTGGTTCTTGATCTATCCAGAAGTTGTCTAGTTGATGCTTGGAAGGGCAAACCGTTTCTTCCAAAATTGAAAAT TCTTGATCTCCGTCACTCTCATGATCTCATTAGAACCCCAGACTTCTCGGGTCTCCCAGCCCTTGAAAAACTAATACTTGAAGACTGCATCCGTTTGGTT CAATTTCACGAATCTATTGGTGATTTACAAAGATTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTGTGGAGCTTCCAGAAGAAATGAGTAGATTGA ATTCACTTCAAGAGCTGGTTTTAAATGGTTGTTCAAATCTTAACAACTTGAATATGGAGTTAGAGCATCATCAGGGGCGCAAGTTGCTTCAAAGTGATGC AATTGTTGCAAGTACATCATTCATTTCATCTCTTCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAATGAGGAAAATGTTGAGATTTACCTCGTTTTCA CTGCCACGCTTCTTGGAGAGTCTAGATTTAAGTGGAACTCCAATTTGTTTTCTTCCAGAAAGCATCAAGGATCTTGGTCTACTCAGAGCCCTATATTTAA GAAATTGCAAAATGCTTCAGGCACTCCCAGAGCTTCCATTCCATTTGGATTTGTTAGATGTGTCCTTTTGCTATTCACTGCAAGGACTTGCAAATCCAAA TAGTTGGACTGAAGGAGATTGTTGTGATCACTTAGTCGAGTTCCAAGATCGGATAAAGCAAGAATTAATCCAAAAGTTAGACTCTCAAATGTTCAGAATA ATGGAAACGGTTAGTGCTCAAATACAGCCATCGAGATTTCAGATAACATTTATGGATGGCATATTCAACGTTTTCGTCTATGCATTTGAAGATGAGATGT TCTCCAATTTGTTTTCTCCAAATATATGTAAATGGCTAATTCAGAATGAGTTTGAAGATAACTTTTCATTCAAAATATCCTCACCTCCTCCTGCGCACCG GATATGTGGCTTTAATTTATTCACAGGGCTTGGTGTGACGTCAGCATACCGTGGCTTTAGTAATGTTTATATTGAAATCAGAAACAATACCAGTGGTCAA TCCTTGCTTTGTCAATTCTTTGTCTTCCTTATGAGGTACGCGCGTGGTGTTCGGGAAGTCCAATCGCTATTGCACACGAAATTAAGGGGCAATGATCCTA CATTTGATAATGGTGATGACGTGAGTATTTCAGTGCGTCCACGTGGTCCAGCTATCCAAATAAGGACCGTTGGTGTACAATGGCTGCATGAAGAGGAAGG AAAGGATGAAGTTATCAATGCTCACAACAGTAGCGATGATGATGATGATGCAGCACACGTAGCCAAAGTAGAAATAGCTTCTCATATAGTTAGAAATTAT TATTGTGGTTTCCATGGTAAACGCAGGGCTCGCAATTTCACTTTTTGGAATTTTGCAAAGAAGGGTCTAGAACACGTATTATTTTAG
AA sequence Show only first row Show all	>Potri.006G282200.1 pacid=42769359 polypeptide=Potri.006G282200.1.p locus=Potri.006G282200 ID=Potri.006G282200.1.v4.1 annot-version=v4.1 MAAGKYQESYSSRFSNCKYQVFLSFRGEDTRKNFTDHLYKALVHAGFHTFRDDDEIRRGKNIRLELQKAIKQSKIAIIVFSKNYAWSKWCLDELVKIMER KRNAECIVFPVFYHVDPSEVRNQTGSFAAAFVEHEKHYKEEMERVNGWRIALKEVANLAGMDLGDGYEAQFVQSIVENVLKNLDPKIFYVPLHFIGRDAL VQDINSWLQDGSHGAAIALLYGIGGVGKTAIAKSVFNQNYYKFEGKSFLSNFRSKDIVCLQRQLLFDILNKTVEINDPDEGILKIKHALCCRRTLIVLDD VDNRDQFNKIIVMQNWLCKGSKIIVTTRNKGLFSANDIQWIRYKVELLDDEKSLELFSWNAFGQANPVDGFVEESWRIVHHCNGLPLALGVIGSSLSGKG REIWESALQQMEVILNFEVQKVLRISYDFLDGDYPKNLFLDIACFFYGMDVDDAVRILDRLDKGARFGIDNLIDRCLVEINSDQRLWMHQLVRDMGREIA RQESPKCQRIWHHGDAFTVLKGTTDAEKLRGLTIDMHALMEYHYAEVVCTDSMVCRKRRRLNFFQQWLSDFFDGGKLQTGQTSLFPILSTDAFRKMPDVK FLQLNYTNFHGSFEHFPKNLIWLCWHGLSWSSIPNHVCLEKLVVLDLSRSCLVDAWKGKPFLPKLKILDLRHSHDLIRTPDFSGLPALEKLILEDCIRLV QFHESIGDLQRLLILNLRNCTSLVELPEEMSRLNSLQELVLNGCSNLNNLNMELEHHQGRKLLQSDAIVASTSFISSLPLKLFFPSRFSMRKMLRFTSFS LPRFLESLDLSGTPICFLPESIKDLGLLRALYLRNCKMLQALPELPFHLDLLDVSFCYSLQGLANPNSWTEGDCCDHLVEFQDRIKQELIQKLDSQMFRI METVSAQIQPSRFQITFMDGIFNVFVYAFEDEMFSNLFSPNICKWLIQNEFEDNFSFKISSPPPAHRICGFNLFTGLGVTSAYRGFSNVYIEIRNNTSGQ SLLCQFFVFLMRYARGVREVQSLLHTKLRGNDPTFDNGDDVSISVRPRGPAIQIRTVGVQWLHEEEGKDEVINAHNSSDDDDDAAHVAKVEIASHIVRNY YCGFHGKRRARNFTFWNFAKKGLEHVLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.006G282200 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G011600 [exp]	1.00	0.9651
AT5G36930			Disease resistance protein (TI...		Potri.011G008868 [exp]	1.41	0.9614
AT5G36930			Disease resistance protein (TI...		Potri.011G013900 [exp]	2.82	0.9435
AT5G36930			Disease resistance protein (TI...		Potri.006G283500 [exp]	4.00	0.9365
AT5G36930			Disease resistance protein (TI...		Potri.011G008292 [exp]	6.48	0.9369
AT5G36930			Disease resistance protein (TI...		Potri.007G143300 [exp]	6.92	0.9097
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Potri.005G183400 [exp]	9.16	0.8953
AT5G36930			Disease resistance protein (TI...		Potri.006G282300 [exp]	14.69	0.9298
AT5G17680			disease resistance protein (TI...		Potri.013G098000 [exp]	19.18	0.9020
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Potri.009G041900 [exp]	21.70	0.8513

Compare expression of checked genes

Potri.006G282200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.