Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SMH905
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67580 212 / 8e-67 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 205 / 5e-64 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 194 / 8e-60 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G72740 107 / 1e-26 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 100 / 6e-24 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G15720 47 / 1e-05 MYB TRFL5 TRF-like 5 (.1) AT1G72650 44 / 0.0001 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 42 / 0.0004 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004900 [exp] 407 / 1e-143 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.009G087000 [exp] 239 / 1e-77 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.001G292700 [exp] 239 / 1e-77 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.018G066300 [exp] 127 / 3e-34 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 120 / 8e-32 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.008G162300 [exp] 46 / 7e-06 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.013G154500 [exp] 48 / 9e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.010G076800 [exp] 43 / 0.0001 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.006G054401 [exp] 42 / 0.0004 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019260 [exp] 263 / 2e-86 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10011546 [exp] 262 / 2e-86 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10025203 [exp] 205 / 2e-64 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10012092 [exp] 204 / 3e-64 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10014653 [exp] 132 / 1e-33 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033775 [exp] 130 / 2e-33 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030935 [exp] 102 / 2e-24 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10040111 [exp] 97 / 4e-23 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 94 / 3e-22 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10024200 [exp] 53 / 2e-07 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF00538 [poplar] [flax] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Potri.007G005000.4 pacid=42765106 polypeptide=Potri.007G005000.4.p locus=Potri.007G005000 ID=Potri.007G005000.4.v4.1 annot-version=v4.1 ATGGGTGCTCCTAAGCAGAAGTGGACTAGCGAAGAAGAGGCAGCCCTTAAAGCTGGAGTGCTTAAGCATGGCACTGGCAAATGGCGTACAATCCTTATGG ACCCTGAATTTAGTGCCGTCTTGCGTTTGCGTTCCAATGTTGATCTCAAGGATAAATGGAGAAATATAAATGTGACTGCAATATGGGGTTCAAGGAAAAA GGCGAAGATCACACTTAAAAGGAGACCACTGACTCCTAAGCGCGAGGAGAATGCAAAGGCTCTCAGCACTGTTGTTCAGACCAATGAAGAAGTTGTTGAT GCTAAGCCTCTCGCATTTGCTAGTGGGACACCAGGGAATGGTGGTCCAAAAGACCTGCTTGCAAGGTTGGATAATCTAATATTAGAGGCTATTACCACTT TGAAGGAGCCAACGGGTTCTGACAGGGCTTCAATTGCTTTGTACATACAGGAGAAATACTGGGCACCCATGAACCTCAGAAAGCTATTGGGAGGAAAACT GAAGCATTTGACTGCCAATGGAAATTTGATTATGGTTCAGCACAAGTACAGGATTGCACCTAGTTCAACATTTTCTGAAGGAAGAAAAAACCATGCCCTC CCAGAAGGAAAACAGAAGGATGCGTTAAAATTGGAGAAGAGTAAGAACAAAATCCTTACTAAAGCCCACATTGATCGAGACCTATCAAAGATTCAGGGCA TGACTGCCTTGGAGGCTGCTGCAGCTGCTGCAAAGGCAGTCGCAGAGGCAGAATCTGCAATTGCAGATGCTGAAGCAGCTGCAAGGGAGGCTGAGAAAGC AGAGGCAGAGGCAGAGGCAGCACAAGTTTTTGCTAAAGCAGCGATTAAGGCATTTAAGCTCCGGGCATGTCATACCTGCTTCATGGTCCGTAAAACCCTT TCTCTGCCACCAGGATTCAACAGTATGGCAAGCAAAGGAGTGCAAGGAGCTAGGGATTGCCATTTAGCAAAACAAAAGAAAAGAGCAAGCCAAGGCCAGC TTTCTTAG
AA sequence Show only first row Show all	>Potri.007G005000.4 pacid=42765106 polypeptide=Potri.007G005000.4.p locus=Potri.007G005000 ID=Potri.007G005000.4.v4.1 annot-version=v4.1 MGAPKQKWTSEEEAALKAGVLKHGTGKWRTILMDPEFSAVLRLRSNVDLKDKWRNINVTAIWGSRKKAKITLKRRPLTPKREENAKALSTVVQTNEEVVD AKPLAFASGTPGNGGPKDLLARLDNLILEAITTLKEPTGSDRASIALYIQEKYWAPMNLRKLLGGKLKHLTANGNLIMVQHKYRIAPSSTFSEGRKNHAL PEGKQKDALKLEKSKNKILTKAHIDRDLSKIQGMTALEAAAAAAKAVAEAESAIADAEAAAREAEKAEAEAEAAQVFAKAAIKAFKLRACHTCFMVRKTL SLPPGFNSMASKGVQGARDCHLAKQKKRASQGQLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.007G005000 [exp]	0	1	SMH905
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.006G128600 [exp]	3.87	0.9451
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	10.19	0.9521
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	18.16	0.9467	Pt-LJPLP.1
AT1G64585		RTFL22, DVL12	DEVIL 12, ROTUNDIFOLIA like 22...		Potri.002G173750 [exp]	22.84	0.8425
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	23.02	0.9406	HF.2
					Potri.006G128300 [exp]	23.32	0.9454
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	23.66	0.9420
AT3G29310			calmodulin-binding protein-rel...		Potri.004G124301 [exp]	26.90	0.8812
AT5G05800			unknown protein		Potri.001G339400 [exp]	29.49	0.9427
AT1G23100			GroES-like family protein (.1)		Potri.010G111600 [exp]	32.72	0.8935

Compare expression of checked genes

Potri.007G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.