Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49690 253 / 2e-82 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G65790 244 / 3e-78 MYB AtMYB68 myb domain protein 68 (.1) AT5G57620 232 / 3e-74 MYB ATMYB36 myb domain protein 36 (.1) AT4G37780 225 / 9e-72 MYB ATMYB87 myb domain protein 87 (.1) AT2G36890 211 / 2e-66 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 202 / 1e-62 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT5G56110 170 / 3e-50 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT5G15310 163 / 1e-47 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G23250 162 / 2e-47 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G28470 162 / 3e-47 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113700 [exp] 328 / 1e-111 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 240 / 9e-77 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G170800 [exp] 236 / 2e-75 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.006G234200 [exp] 225 / 6e-72 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.016G099200 [exp] 223 / 2e-70 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.004G215100 [exp] 222 / 4e-70 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 222 / 4e-70 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 221 / 6e-70 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.018G058800 [exp] 218 / 1e-69 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007248 [exp] 271 / 1e-88 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 269 / 4e-88 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10001316 [exp] 242 / 3e-78 AT5G57620 280 / 2e-93 myb domain protein 36 (.1) Lus10006978 [exp] 241 / 8e-78 AT5G57620 286 / 6e-96 myb domain protein 36 (.1) Lus10011606 [exp] 238 / 6e-76 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 237 / 1e-75 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10013830 [exp] 219 / 8e-69 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10016139 [exp] 218 / 8e-69 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10021428 [exp] 218 / 1e-68 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10026543 [exp] 216 / 6e-68 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G007900.1 pacid=42765581 polypeptide=Potri.007G007900.1.p locus=Potri.007G007900 ID=Potri.007G007900.1.v4.1 annot-version=v4.1 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGTCCATGGTCTCCCGAGGAAGATGCCATACTCAAGGCCTATATTGAGCAGCATGGAA CGGGTGGCAATTGGATTGCCTTGCCACAGAAGATAGGCCTGAAAAGGTGTGGCAAGAGTTGTCGACTTAGATGGTTGAATTACCTCCGTCCAAACATTAA ACATGGAGGGTTTTCAGAGGAAGAAGATAACATTATTTGCAGTCTCTATATAAGTATTGGAAGCAGGTGGTCTATCATTGCTGCTCAGTTACCTGGAAGA ACCGATAATGATATAAAAAACTACTGGAACACAAGGCTTAAGAAGAAGCTCTTAGGAAAACAGCGCAAGGAACAAGCAGCCCGGCGAGCTAGTCTCAAGC AAGAAATCATGACAAAGAGAGAAATAAATGAGAGCTTCATGGTTCCTGGGGCTATCCCTCATCAACAAAGCCCTTACTGGCCAGAGGTACCAGCTCTAGT CATGAATCAAAACCAAGATTCTCATTTGATGGATCAAGAATCCATTAGGAACTTACTGATCAAACTTGGTGGAAGATTTTCTGACAATAATCAAGAGTCA GCCCTATTCACTACAATCAACAATTACCCTCTTGACGGTTCAAGCAGACAAGATCAAGTACCATACACAAACTCCATAGATGTGCTTTCTTCTTCGGCAC CCATGCGATCAATGGATAGTACCTGTTGTTCTCAATTTCCTAATAGCAACTACAACGGTCCAAATATGTGTCAAGCTGGACTTGAAAACTTGTTGGTCGA GCTAGGTGGATTGGTCTGTAGCAACCCACAACGTGTAGAAGGTTTGGATAGTTTCTATGGGATGGACATGGCTGCCAGTGGCAGCACGGGGGCTAGCTCT GCAGAAAGTAACAGCTGGGGACATATAAGCTCTCTTGGTTATCCTCAGCTTGTTTCTGACTATGAAACTTGCTTGCAAAGCATGCCACAAGATTCATCTT TTGAAGATTCAAGCTTCTTTGGGCCACATTAA
AA sequence Show only first row Show all	>Potri.007G007900.1 pacid=42765581 polypeptide=Potri.007G007900.1.p locus=Potri.007G007900 ID=Potri.007G007900.1.v4.1 annot-version=v4.1 MGRAPCCDKANVKKGPWSPEEDAILKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGR TDNDIKNYWNTRLKKKLLGKQRKEQAARRASLKQEIMTKREINESFMVPGAIPHQQSPYWPEVPALVMNQNQDSHLMDQESIRNLLIKLGGRFSDNNQES ALFTTINNYPLDGSSRQDQVPYTNSIDVLSSSAPMRSMDSTCCSQFPNSNYNGPNMCQAGLENLLVELGGLVCSNPQRVEGLDSFYGMDMAASGSTGASS AESNSWGHISSLGYPQLVSDYETCLQSMPQDSSFEDSSFFGPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232900 [exp]	1.73	0.9373
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.017G137600 [exp]	3.74	0.9046
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.005G160300 [exp]	6.48	0.9099	PUP1.1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	7.34	0.9288
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.008G081600 [exp]	8.36	0.9315
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	10.58	0.8985
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	11.13	0.9166
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	11.83	0.8917
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232700 [exp]	12.48	0.8991
AT3G54070			Ankyrin repeat family protein ...		Potri.006G062700 [exp]	13.03	0.8787

Compare expression of checked genes

Potri.007G007900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.