Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10510 510 / 4e-177 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 456 / 3e-157 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT1G51190 342 / 2e-111 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 335 / 6e-109 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 331 / 4e-107 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 328 / 4e-106 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 297 / 4e-96 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 298 / 9e-95 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 228 / 3e-69 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 210 / 1e-63 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205700 [exp] 343 / 2e-112 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 342 / 4e-112 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 342 / 6e-112 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.018G091600 [exp] 341 / 6e-111 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.008G076400 [exp] 340 / 5e-109 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 337 / 5e-108 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 304 / 4e-97 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 304 / 7e-96 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 301 / 1e-94 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012728 [exp] 530 / 0 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 497 / 8e-173 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10031831 [exp] 339 / 1e-111 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 340 / 2e-110 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 293 / 1e-92 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 285 / 3e-92 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 292 / 5e-92 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10036719 [exp] 229 / 1e-69 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 228 / 3e-69 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 223 / 1e-68 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.007G011600.3 pacid=42766837 polypeptide=Potri.007G011600.3.p locus=Potri.007G011600 ID=Potri.007G011600.3.v4.1 annot-version=v4.1 ATGGCACCAGCTACTAACTGGCTTTCTTTTTCACTCTCTCCAATGGAAATGTTGAGGTCATCTGAATCTCAGTTCATGTCTTATGAGAGCTCCTCTTCTG CCTCTCCTCACTACTTGTTCGATAACTTCTATGCTGATGGCTGGGCACACCCCAAAGAATCACAAGTCACGACCACAACAATGGCAGAGAACTCTAATAT TCTGACAAGCTTTATAGGCCCAGAAACTCCACACCAACAAGTCCCAAAACTGGAGGATTTTCTTGGAGATTCTTCATCATCTATTAATGTTCGATATTCG GATAATAGCCAGACAGAGACCCAAGACTCGTCCTTGACCCACATCTATGATCATCAGGGCTCTGCAGCGGCTTACTTCAACGAGCAACAAGATCTTAAAG CTATTGCTGGGTTCCAAGCCTTCTCGACTAACTCAGGCTCAGAGGTTGATGACTCGGCTTCAATAGCTCCCACACAGGTTGGTGGTATTGAGTCGACTGG GAACGAGTTGGGGTTCTCTAATAATGCGGCCTTGTCACTTGGGGTGAATAATGATACTAGCAATAATCAGGGTGGCTCAACAGAGAAGCTTGCTATTGTT TCTGCTGACAACGATTGCTCTAAAAAGATTGCTGACACCTTTGGTCAGCGAACTTCTATTTACAGAGGAGTTACCAGACATCGATGGACAGGCAGATATG AAGCGCATCTATGGGATAACAGCTGTAGGAGAGAGGGTCAGGCTAGAAAAGGGCGTCAAGTATACTTAGGTGGGTATGATAAGGAAGAAAAGGCAGCTAG AGCTTATGACTTGGCAGCTCTAAAATACTGGGGTCCAACTGCAACCACCAATTGCCCTGTTTCGAATTATACTAAAGAACTGGAGGATATGGAGTATGTG TCCAAGCAAGAATTCATTGCCTCATTGAGGAGGAAGAGTAGTGGTTTTTCACGGGGAGCCTCTATTTACAGGGGTGTCACAAGGCATCATCAACAGGGTC GTTGGCAAGCGAGGATAGGCCGTGTAGCTGGAAACAAGGATCTCTACCTTGGAACATTTGCCACAGAAGAGGAAGCAGCTGAGGCGTATGATATAGCTGC CATAAAGTTTAGGGGTCTGAATGCAGTGACCAATTTTGAGATGAACCGATATAATGTTGAAGCCATCATGAAGAGTGCTCTTCCAGTTGGTGGAGCAGCA AAGCGCTTAAAGACCTCACTAGATGCCGAGCATAAACCAAATGTAAGCGACAACCACCAGCCCCAGCCGCGGTGCAACAGCTATAGCACCAACAACAACA TCAGTTTTGCTGCTGTTCAGCCAGCTTCTACTGCAGTCCCATGTGGTATTACATTTGATGCTTCCACGGCGCTTTATCATCACAACCTCGTCCACCACCT CCAAACCACCAACAATTTCGCAGCAACTGACTCCTCCGGTTCCACCTCATCCATGGCAACTGCAATGACTACTTTGCCACAAACAGCTGAGTATTTTACA TGGCCTCACCAAACTTATTGA
AA sequence Show only first row Show all	>Potri.007G011600.3 pacid=42766837 polypeptide=Potri.007G011600.3.p locus=Potri.007G011600 ID=Potri.007G011600.3.v4.1 annot-version=v4.1 MAPATNWLSFSLSPMEMLRSSESQFMSYESSSSASPHYLFDNFYADGWAHPKESQVTTTTMAENSNILTSFIGPETPHQQVPKLEDFLGDSSSSINVRYS DNSQTETQDSSLTHIYDHQGSAAAYFNEQQDLKAIAGFQAFSTNSGSEVDDSASIAPTQVGGIESTGNELGFSNNAALSLGVNNDTSNNQGGSTEKLAIV SADNDCSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNCPVSNYTKELEDMEYV SKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYNVEAIMKSALPVGGAA KRLKTSLDAEHKPNVSDNHQPQPRCNSYSTNNNISFAAVQPASTAVPCGITFDASTALYHHNLVHHLQTTNNFAATDSSGSTSSMATAMTTLPQTAEYFT WPHQTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Potri.007G011600 [exp]	0	1
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	1.00	0.8759	RAP15
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	4.89	0.8208
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107200 [exp]	5.29	0.8429
					Potri.004G021901 [exp]	11.00	0.8102
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098900 [exp]	11.40	0.7744
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	12.40	0.7978
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	12.48	0.7645
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.006G167700 [exp]	12.96	0.8280
AT5G18260			RING/U-box superfamily protein...		Potri.019G032300 [exp]	13.26	0.7797
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.004G215100 [exp]	14.35	0.8535

Compare expression of checked genes

Potri.007G011600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.