Plant FIBer expression Database

Potri.007G012400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50940 367 / 1e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT3G50930 364 / 6e-121 BCS1 cytochrome BC1 synthesis (.1)
AT2G18193 345 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT2G18190 341 / 7e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT5G17760 322 / 1e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT5G17730 315 / 3e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT5G17740 305 / 1e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT3G28610 294 / 6e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT3G28540 292 / 7e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT3G28600 290 / 3e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G177200
[exp]
369 / 5e-124 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.007G020900
[exp]
367 / 4e-123 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1)
Potri.005G119900
[exp]
354 / 5e-118 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.009G119132
[exp]
355 / 8e-118 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1)
Potri.007G020600
[exp]
354 / 9e-118 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.007G020500
[exp]
350 / 5e-117 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.009G119066
[exp]
352 / 8e-117 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
Potri.002G032700
[exp]
349 / 1e-116 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1)
Potri.007G020800
[exp]
344 / 7e-114 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041918
[exp]
564 / 0 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1)
Lus10028463
[exp]
456 / 3e-158 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1)
Lus10014284
[exp]
357 / 4e-119 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1)
Lus10015802
[exp]
353 / 8e-118 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10037004
[exp]
341 / 3e-113 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1)
Lus10024275
[exp]
335 / 3e-110 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10003213
[exp]
331 / 2e-108 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10025989
[exp]
318 / 3e-105 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1)
Lus10007391
[exp]
320 / 1e-104 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10014496
[exp]
300 / 8e-97 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00004 AAA ATPase family associated with various cellular activities (AAA)
CL0023 PF14363 AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence
>Potri.007G012400.1 pacid=42766237 polypeptide=Potri.007G012400.1.p locus=Potri.007G012400 ID=Potri.007G012400.1.v4.1 annot-version=v4.1
ATGGGGTCAAGTCTATCCCTGATAGCTTCTGTTGCAATTCTACGTAGCTCCATCAATGATTTCGTTCCGCAAGAAATACGCAGTTGTTTGCAGGAATTAG
CAAGTCGTTTTTCCTCAGAACTCACCATGGTTATTAGCGACTCGCATGAAGGATCAAAAAACCATCTCTTTCATGCCTTGATGATATATCTTGGCAGCAA
TGCTTTCTCTACATCATCTGTGCCACAACGAATCACGGTTGGCAAGAACGAAAACATCAAGGCACTGGCGTATGGCCTCGACAGGAATTGCAAGATTGTC
GACACCTTCCATGGTGTGGACATGAAGTGGTCTTACTGCAGTGAATTCAATCCAGCACTCCAGTATGAGTTGAAATGGTATGAACTCCGTTTTCATAAGC
GACACGCGAGTATGGTCAGGAACAAGTATCTGCCTTACATTATTGAAATGGCTAAGAAAATTAAGGATCAAAACAGGGTAGTTAAGTTCTACACTACTCG
CGGGGGACGCGATGGATGGAGCTGTAAGGGGATCAACTTGGATCACCCTATGACTTTCAATACGCTAGCAATGGATGGAAACCTCAAACAGAAAATTATA
GAGGATCTTGATAGATTCATCAAAGGAAAGAACTATTACAGGAAGATTGGTAAGGTATGGAAACGGGGCTATTTATTGTATGGCCCTCCAGGAACTGGGA
AATCAAGCTTGATAGCAGCCATGGCCAACCATCTTAATTTTGACATCTACAGCTTGAACTTGTCCGCTGTCAGTTCTGATTCTTCCCTGGAGTTTTTGTT
GCTTCACATGTCCAATCGTTCAATTCTCGTGGTTGAAGATATCGACTGCTCGATTGAGCTACAGAATCGTCAAGCCGGGGAGCATCCATCGGATCATGAT
AAAACTCCTAGAAAGCCTCAGGAAAAGGTTGTGACACTCTCTGGACTTCTCAACGCCATTGATGGCCTATTGTCCTGCTGTGGAGATGAAAGGGTTATAG
TTTTCACTACTAACTACAAAGATCGAATCGATCCTGCCTTACTAAGAGCAGGCCGAATGGACATGCACATTAATCTTTCATATTGCACATTCTCCACCTT
CAAGCAGCTTGCAGCCAATTACTTGGACATATGGAACCACGATCTTTTTCCTCGCATTGAAAAGCTTATTTCAGAAGTTCAAGTTAGCCCAGCTGAAGTT
GCTGGTGAACTAATGAAGATTAGAAATCCTAAAACCAGTCTCGAGGGCCTCAGCAGGTTTTTGGAAAGCAAAAGAGAAGCAGCAAAATCCTCAGCTCCTC
CTACTTCGGTACCTGAAGGTGTTGAGGATGAACCAGGTGGTGTGTAA
AA sequence
>Potri.007G012400.1 pacid=42766237 polypeptide=Potri.007G012400.1.p locus=Potri.007G012400 ID=Potri.007G012400.1.v4.1 annot-version=v4.1
MGSSLSLIASVAILRSSINDFVPQEIRSCLQELASRFSSELTMVISDSHEGSKNHLFHALMIYLGSNAFSTSSVPQRITVGKNENIKALAYGLDRNCKIV
DTFHGVDMKWSYCSEFNPALQYELKWYELRFHKRHASMVRNKYLPYIIEMAKKIKDQNRVVKFYTTRGGRDGWSCKGINLDHPMTFNTLAMDGNLKQKII
EDLDRFIKGKNYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANHLNFDIYSLNLSAVSSDSSLEFLLLHMSNRSILVVEDIDCSIELQNRQAGEHPSDHD
KTPRKPQEKVVTLSGLLNAIDGLLSCCGDERVIVFTTNYKDRIDPALLRAGRMDMHINLSYCTFSTFKQLAANYLDIWNHDLFPRIEKLISEVQVSPAEV
AGELMKIRNPKTSLEGLSRFLESKREAAKSSAPPTSVPEGVEDEPGGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50940 P-loop containing nucleoside t... Potri.007G012400
[exp]
0 1
AT5G56510 APUM12 pumilio 12 (.1) Potri.014G020300
[exp]
8.06 0.8369

Potri.007G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.