Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43910 536 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 402 / 2e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 399 / 1e-133 BCS1 cytochrome BC1 synthesis (.1) AT5G17760 379 / 6e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 375 / 9e-125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 365 / 8e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 365 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 364 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 315 / 1e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 301 / 5e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119200 [exp] 834 / 0 AT1G43910 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 406 / 2e-137 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 400 / 4e-135 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 393 / 5e-133 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 392 / 1e-132 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020800 [exp] 392 / 5e-132 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020900 [exp] 384 / 6e-129 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.008G177200 [exp] 374 / 5e-125 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119132 [exp] 368 / 5e-122 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014284 [exp] 377 / 5e-126 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 369 / 3e-123 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 360 / 9e-120 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 347 / 3e-114 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 336 / 1e-111 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 339 / 2e-111 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 337 / 5e-110 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 315 / 3e-101 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 302 / 1e-96 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 301 / 1e-96 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.007G019600.4 pacid=42766467 polypeptide=Potri.007G019600.4.p locus=Potri.007G019600 ID=Potri.007G019600.4.v4.1 annot-version=v4.1 ATGGCGTCTCTCTTGAAGGAATTGCCCTCCATGACTACAATTCTCTCTGTGTACGCATCCCTATCCGGTTTATCCATGCTTATCCGCACCATCTTGAATG AAATGATTCCAAGGGGTATGCGTGACTACATAGCTACTAAGTTCTCAGATTTCTTTGCCGCCTACTTCTCCTCAGAGTTCACCTTCATCATTGAAGACCG ATGGCAAGCTGTGGAGAATGAAACCTTTCGAGCTGTTGAGGTCTATCTTCCAACCAAAATCGGCCCTTCCACCAAAAGCCTTCTTTTAGGCACCAGTGAC ACGAACAACATCACTGCCCCACCTAAACCAGGGATTCCTATTGATGCTAAAGTAATTGATGTTTTTCAAGGTATGCATTTTGAATGGAAACTCTGTGAGA AAGAAGCGAAAAAGTACTCCTATCGCCAGAAAAGATACTTCCAGTTGAATTGCAAAAAGAACTACAGAGAACATGTGATGCAAAGCTACCTGCCACACAT TAGCAAGACTGCAGCTTCAATCTTGAACAAGAGGGAGACTCTCAACATCTATACTTATGATAACGAAGATTCTATGTGGGAATCTACAGTGTTTAAGCAT CCAGCTACTTTTGAGACTCTAGCAATGGACCCTGACCTGAAGAAGTTCATAACTGAAGATCTTGACTTGTTTGTGCAAAGAAAGGAATACTTTCGGAGTG TTGGTAGAGCTTGGAAAAGAGGGTACCTTCTTCATGGTCCACCAGGGACTGGAAAATCCACCCTCGTTGCTGCCATTGCAAACTATCTAAGATTCAACAT CTATGATCTCCAGCTCCAAGCTGTAAGAAATGACTCTCAACTCAGGACGATACTCACCTCCACAACCAATCGTTCAATTCTTCTTATTGAGGACATTGAT TGCAGTACAAAATATTCACGTTCCCGCAATCAAACTAGGAATCCAAAGGAAGATGGTGAGGAAGATGATGGCGATGATGATGATCAACTTGATAAGAAGA TTTCTTTTGATCCTGGGGTGACTTTATCTGGTTTGCTGAACTTCATTGATGGACTATGGTCAAGCTGTGGGGATGAAAGAATAATCATTTTCACCACAAA TTACAAAGAGAAGTTGGACCCAGCATTGTTGCGCCCAGGACGAATGGATGTTCATATTTACATGGGACATTGTACTCCTGCAGCTTTCAAGAAGCTTGCC TCTACATATCTTGGGATTAAAGAGCATGTCCTTTTCAAATGCGTTGAAGATCTCATTCAGAGTAGAGTTATTACCCCAGCAGAAGTTGCACAGCATCTTA TGAAATGTGACAATCCTCAGGTTGCACTTCAAAGTCTAATTGAGTTTATAAATCTGAAGGAGACTACTGAAATGATGGATAATGGGGCTAAAAAGGAGGA TGAAGAAGAGGTCATAAAAGAAGAGGTTGTGAAGTGTAGAACTGGAAGCATGAAACAGGATGTGAAACAATCCAAGATTCTAACAACATCCATTTACCTG ACCTAG
AA sequence Show only first row Show all	>Potri.007G019600.4 pacid=42766467 polypeptide=Potri.007G019600.4.p locus=Potri.007G019600 ID=Potri.007G019600.4.v4.1 annot-version=v4.1 MASLLKELPSMTTILSVYASLSGLSMLIRTILNEMIPRGMRDYIATKFSDFFAAYFSSEFTFIIEDRWQAVENETFRAVEVYLPTKIGPSTKSLLLGTSD TNNITAPPKPGIPIDAKVIDVFQGMHFEWKLCEKEAKKYSYRQKRYFQLNCKKNYREHVMQSYLPHISKTAASILNKRETLNIYTYDNEDSMWESTVFKH PATFETLAMDPDLKKFITEDLDLFVQRKEYFRSVGRAWKRGYLLHGPPGTGKSTLVAAIANYLRFNIYDLQLQAVRNDSQLRTILTSTTNRSILLIEDID CSTKYSRSRNQTRNPKEDGEEDDGDDDDQLDKKISFDPGVTLSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDPALLRPGRMDVHIYMGHCTPAAFKKLA STYLGIKEHVLFKCVEDLIQSRVITPAEVAQHLMKCDNPQVALQSLIEFINLKETTEMMDNGAKKEDEEEVIKEEVVKCRTGSMKQDVKQSKILTTSIYL T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Potri.014G036000 [exp]	2.64	0.8779
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	2.82	0.8945
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.009G051500 [exp]	3.31	0.8753	NADK1.2
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	4.58	0.8912	Pt-CYP94.7
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	4.89	0.8928
AT5G67265			unknown protein		Potri.002G122800 [exp]	7.74	0.8656
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	7.93	0.8604
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	8.12	0.8597
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	8.12	0.8825
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	8.94	0.8628

Compare expression of checked genes

Potri.007G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.