Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18193 511 / 8e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 498 / 2e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 440 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 432 / 3e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50930 425 / 2e-144 BCS1 cytochrome BC1 synthesis (.1) AT5G17730 419 / 7e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 405 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 347 / 2e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 328 / 4e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 323 / 1e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020600 [exp] 804 / 0 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 514 / 1e-180 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 503 / 5e-176 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 471 / 8e-164 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 430 / 2e-148 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.007G020900 [exp] 427 / 8e-147 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 399 / 9e-135 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 393 / 6e-134 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 387 / 4e-130 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015802 [exp] 440 / 5e-152 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 436 / 1e-150 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 436 / 4e-150 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 401 / 8e-136 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 390 / 7e-132 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 376 / 2e-126 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031318 [exp] 367 / 2e-122 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 361 / 1e-119 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 352 / 1e-118 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 330 / 3e-108 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.007G020500.1 pacid=42765728 polypeptide=Potri.007G020500.1.p locus=Potri.007G020500 ID=Potri.007G020500.1.v4.1 annot-version=v4.1 ATGTTTTCTCCAACGAACATGCCTCGATCAGTATCCACATTATTCTCTGCTTATGCCTCTTTTGCAGGATCAATCATGCTTATCCGTTCCATGGAAAAGG AACTAATCCCTGATGAGCTTCGCTCTTATTTATCCACTGCCATTCCCTACCTCTTCACTCCTCTCTCCCCTAACATCACCCTTGTCATTGATGAGCATTT TGGCGTGTCTCGCAACCAAGTTTATGATGCAGCAGAAATCTATCTCAAAACTAAAATTAGCCCATCAACAGAGAGACTCAAAATCGGCAAGACACCAAGA CAAAGGACCTTCTCTGTCGCAATCGAAAAAGGTGAGGTAGTTACAGATGTGTACGAGAATATCATGTTGAAGTGGGCTTATGTCTGTACAGAGCAACAAA ACGACGGTTACTCCGAAGAAAAAAGGAGTTTTGAATTGTCCTTTAACAAGAAGTACAAAGAGAAAGTTATGGATTGTTACTTGCCTCATGTTTTGAAGAG GGGTAAAGAGATAGAAGATGAAGAGAAGGTTGTTAAGCTTTATAATCGTCAGGGGTCCATAAATCTTGAACATCCTTCTACTTTTGATACTTTAGCTTTG GATCCAGAGTTGAAGAAGATGATAGTTGATGATTTGAAGAGATTTTTGGGAAGAAAAGAATTTTATAAGAAAGTGGGCAAGGCTTGGAAACGTGGGTACC TGCTGTATGGACCACCTGGGACTGGAAAATCAAGCTTGATTGCTGCCATGGCTAACTATCTCAAGTTCGATATCTATGATTTGGAGCTAACTAGTTTGTC TTCTAATTCCGATCTGAGGAGGGTTCTTCTGTCCACCACGAGTCGGTCAATCTTGGTGATTGAGGATATCGATTGTAGTGTGCAAACGCGGGATCGGCAA CAAGGAGGGGATCAGTATGATGGTTCTAACTCCACGTTGACACTATCTGGATTGCTGAATTTCATTGACGGATTGTGGTCAAGTTGCGGTGATGAGCGAA TCATTGTGTTCACGACCAATCATAAGGACAGGCTAGACCCTGCTCTGCTGCGTCCTGGTAGAATGGATGTGCATATTAACATGCCCTACTGCACACCTCA AGCATTCAGTATTCTGGCTTCTAATTACCTTGACATTCGCGACAAGAACCATTATCTCTATGACGAAATTGAAGGGCTAATGGAGAGTACTAACGTAACC CCAGCAGAGGTAGCAGAGGAACTCATGGCAAGTGAAAATGCTGATGTTGCCCTTGAAGGACTTGTTAACTTCCTTAAGCGGAAGCATAGTGAAGCTAATG AAGTTAAGAGTGAAGAGAATGGCAAAGTTGAAGAAGCAAAGATTCTGAACTGA
AA sequence Show only first row Show all	>Potri.007G020500.1 pacid=42765728 polypeptide=Potri.007G020500.1.p locus=Potri.007G020500 ID=Potri.007G020500.1.v4.1 annot-version=v4.1 MFSPTNMPRSVSTLFSAYASFAGSIMLIRSMEKELIPDELRSYLSTAIPYLFTPLSPNITLVIDEHFGVSRNQVYDAAEIYLKTKISPSTERLKIGKTPR QRTFSVAIEKGEVVTDVYENIMLKWAYVCTEQQNDGYSEEKRSFELSFNKKYKEKVMDCYLPHVLKRGKEIEDEEKVVKLYNRQGSINLEHPSTFDTLAL DPELKKMIVDDLKRFLGRKEFYKKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTSLSSNSDLRRVLLSTTSRSILVIEDIDCSVQTRDRQ QGGDQYDGSNSTLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRLDPALLRPGRMDVHINMPYCTPQAFSILASNYLDIRDKNHYLYDEIEGLMESTNVT PAEVAEELMASENADVALEGLVNFLKRKHSEANEVKSEENGKVEEAKILN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	0	1
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	2.23	0.8618
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	4.58	0.8518
					Potri.004G037750 [exp]	5.19	0.7986
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.014G167100 [exp]	5.65	0.8565
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	7.34	0.8382
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G118062 [exp]	8.71	0.8512
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	8.77	0.8439
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	8.83	0.8265
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	14.07	0.8165
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G020000 [exp]	14.14	0.7672

Compare expression of checked genes

Potri.007G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.