Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17760 507 / 6e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18190 468 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 465 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 455 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 454 / 6e-155 BCS1 cytochrome BC1 synthesis (.1) AT5G17730 447 / 8e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 441 / 1e-151 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 396 / 6e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 357 / 3e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 345 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119900 [exp] 799 / 0 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 527 / 0 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 513 / 6e-180 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 473 / 1e-163 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 454 / 5e-156 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 427 / 2e-146 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 426 / 3e-146 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 420 / 3e-142 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 406 / 1e-136 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037004 [exp] 466 / 3e-161 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 464 / 2e-160 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 456 / 5e-157 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 446 / 2e-152 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 400 / 1e-134 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 385 / 5e-129 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 369 / 3e-124 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10031318 [exp] 360 / 4e-119 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 361 / 8e-119 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 339 / 6e-111 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.007G020800.1 pacid=42765019 polypeptide=Potri.007G020800.1.p locus=Potri.007G020800 ID=Potri.007G020800.1.v4.1 annot-version=v4.1 ATGTATCTCTCATTTAACTTCGTGTGTTCACTCCGCTTTCTCTGTTCCAAGTTTGCAACCATGTTTTCTAGCAAAGAACTTACTTCTCCGTCATCATTGT TGGCTGCCTACGCCTCCATGGCTGGTTCAATAATGATGGCTCAATCCATGGCCAATCAATTTGGCCATTTAATACCCCAACAAATCAGAGATTACCTTTT ATCAACTCTTCGTTACTTCTTTAAGCCTCCATCTCCTATTCTTACCTTAGTCATTGAGGAGTCCACAGGAATTTCTCGAAACCAAGTCTATGATGCTTCA GAGACTTACTTAAGTACTAAGGTTAGTCCCACAACAAAAAGGCTCAAAATTAGCAAAACCCCAAAAGAGAAGAATTTAACAATCAATCTTGAGAAGGGTG AGACAGTCGTTGATCATTATGAAGGGATTGAGCTTCTGTGGAGATTGGTATTTGTAAAACCTGAAAAGAAAGACCCCAGCAATCCCTTTCCTGTCGTAGC CGAGAAACGATGGTTCGAGTTAAGTTTCCACAAGAATCATAAGGAGAAAATATTAGGATCTTACATGCCTTATATTATTGAAAAGGCAAAAGAAGCAAAA GAGAAGGTGAGGGTTTTGAAGATGCACACACTTCAAAGTTCACGTGCCTATGGAGAAATCAAGTGGGAGTCTGTAAATCTTGAACATCCAGCAACATTTG AGACTTTGGCTATGGAGCCAGACCTGAAAAATATTGTCATAGAGGATTTGAATAGATTTGTTAGGAGGAAAGAGTTCTATAAGAGAGTTGGGAGGGCTTG GAAACGTGGGTACTTGTTGTATGGGCCACCAGGGACTGGCAAATCAAGCTTGGTTGCTGCCATGGCTAATTACTTGAGGTTTGATGTGTATGATTTGCAG CTTGCAAATATAATGCGGGATTCTGATCTGAGAAAATTGTTGCTGGCAACTGGGAATAGATCAATACTTGTGATTGAAGATATTGATTGTAGCGTGGATT TGCCTGATCGAAGACAGGTTCGTGGAGATGGAGATGGTCGAAAACAACATGATGTGCAGTTGACACTGTCTGGCTTACTGAACTTCATTGATGGATTATG GTCAAGTTGTGGGGATGAAAGAATCATCATATTTACTACCAACCATAAAGACAGGCTAGACCCTGCTCTGTTGCGTCCGGGACGCATGGACATGCACATT CACATGTCCTACTGCACGCCTCATGGGTTTAGGGTGCTGGCCTCCAATTACTTGGGCGTTAATGGTTATCATAGACTGTTTGGAGAAATTGAAGACCTGA TAGAAAACACAGAGGTCACTCCTGCGCAAGTGGCAGAGGAGCTAATGACAAGTGAAGATTCTGATACTGCACTCGAAGGGCTTGTGAAACTACTGAAGAG AAAGAAATTGGAAGGCGATGAACTTTTTGATGAAGGTTTACACAAGGGTGAAATACAAAAAGCAAAAAAGCAGAAAGTTGAGAACAAGCGTAGAGGATCT GTTAGAATTAAAAGCAGAAGGAAAATCATCAAGAGAAGAAGCTATTGA
AA sequence Show only first row Show all	>Potri.007G020800.1 pacid=42765019 polypeptide=Potri.007G020800.1.p locus=Potri.007G020800 ID=Potri.007G020800.1.v4.1 annot-version=v4.1 MYLSFNFVCSLRFLCSKFATMFSSKELTSPSSLLAAYASMAGSIMMAQSMANQFGHLIPQQIRDYLLSTLRYFFKPPSPILTLVIEESTGISRNQVYDAS ETYLSTKVSPTTKRLKISKTPKEKNLTINLEKGETVVDHYEGIELLWRLVFVKPEKKDPSNPFPVVAEKRWFELSFHKNHKEKILGSYMPYIIEKAKEAK EKVRVLKMHTLQSSRAYGEIKWESVNLEHPATFETLAMEPDLKNIVIEDLNRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLRFDVYDLQ LANIMRDSDLRKLLLATGNRSILVIEDIDCSVDLPDRRQVRGDGDGRKQHDVQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHI HMSYCTPHGFRVLASNYLGVNGYHRLFGEIEDLIENTEVTPAQVAEELMTSEDSDTALEGLVKLLKRKKLEGDELFDEGLHKGEIQKAKKQKVENKRRGS VRIKSRRKIIKRRSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	7.07	0.8202
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	9.21	0.7840
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019200 [exp]	12.48	0.7572
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	14.00	0.7971
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	14.28	0.7459
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	14.69	0.7799
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	16.00	0.7643
AT3G52490			Double Clp-N motif-containing ...		Potri.006G204500 [exp]	17.02	0.8193
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.008G142000 [exp]	17.14	0.7346
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	17.94	0.7806

Compare expression of checked genes

Potri.007G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.