Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 561 / 0 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 531 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 404 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 389 / 5e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 373 / 1e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 373 / 3e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 367 / 5e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 323 / 3e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 321 / 9e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 317 / 4e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119132 [exp] 492 / 6e-171 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 471 / 2e-162 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 449 / 2e-154 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 445 / 7e-153 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020800 [exp] 439 / 2e-150 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G032700 [exp] 434 / 3e-149 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 419 / 1e-143 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 418 / 3e-142 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 395 / 4e-134 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014284 [exp] 553 / 0 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 453 / 8e-158 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10037004 [exp] 429 / 9e-147 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 427 / 4e-146 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 414 / 2e-140 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 398 / 2e-134 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 392 / 1e-131 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 354 / 3e-116 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 322 / 1e-104 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 317 / 8e-103 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.007G020900.1 pacid=42766000 polypeptide=Potri.007G020900.1.p locus=Potri.007G020900 ID=Potri.007G020900.1.v4.1 annot-version=v4.1 ATGGACATCTCTTCATCGACTGAAACCAAACTAGCCACCGCAAAGATAGTTCTATCCACCGCAGCCTCTGTTGCGGCTACGGCGATGCTAGCTAGATCTA TAGCTCAAGACTTCATGCCCCATGAATTCCAAGCCTACTTTTTCTATAAGATCCGCAATTTCTTCGGCCGTTTCTCATCCCAACTCACTATGGTTGTTGA TGAATTCGATGGATACACCTACAACGAAATATACGGGGCAGCAGAGACTTATTTGGGAAGCAAGATCTCTCCATCAACACAGAGACTCAAAGTAAGCAAA CCGGAGAAAGAAAACGAGTTCACTGTCAAAATGGACCGCAATGAAGAAATCGTCGATATCTTTCAAGATGTTAAATTCAAGTGGGCTCTTGTTTGTACCC ATGTTGATTCTAAAGACCACTACAACTCTTTTAATCATACCGCTACACTAAGATCAGAAGTGCGGTCTTTCGAAGTCAGTTTCCCTAAGGAACACAAAGA AATGGTTCTTGAATCTTATTTTCCTTACATTGTCAAAGTAGCAAAATCCATGGTGCAGGAGAAGAAGACATTGAAGATTTTCACAGTTGACTACGAGCAC ATGTATGGAAATTTAGCTGATGCATGGAAACCAGTGAATCTTGATCATCCTGCAACATTTGATACTCTTGCTCTGGACACAAAAGATAAAGATAAAATCC TGGAAGATCTTGAAAGGTTTGTTAAGAGGAGAGATTATTACAGGAAGGTTGGTAAGGCTTGGAAAAGAGGGTATTTGTTGTATGGACCACCAGGGACTGG TAAATCTAGCTTGATTGCTGCAATGGCGAATTATCTGAATTTTGATATCTATGACTTGGAGTTGACTGAGGTGAGGTGCAACTCCGACCTCAGGAAAGTG CTTATTGCTACTGCAAATCGGTCAATATTGGTGGTGGAGGATATAGATTGCACCATTGAATTGCAGGATCGAATCGCTGAAGAAAGGGCTACGCCAGGTC TTGGTTATCCTCCACAAAAACAGGTGACATTGTCAGGATTGCTAAATTTTATCGATGGATTATGGTCTAGCTGTGGCGACGAGCGAATTATAGTGTTCAC CACAAATCACATAGAAAAGCTAGACCCAGCATTGTTGCGTCCAGGACGCATGGATGTTCATGTTCACATGTCGTATTGCACTCCTTGTGGATTTAAGTTT CTTGCTGCTAATTATCTTGGAATTAAAGATCATGTTTTATTTGAAGAGATCGAGGAGCTGATTAAAACAGCAGAAGTGACCCCAGCAGAAGTGGCAGAAC AGCTTATGAGGAGTGATGAGCTTGAGACCGTGCTCAAAGAGCTAATTGAATTTCTCGTGGATAAAAAGAAGGAAAAAGAGGAAAAAGCCATGGCTAAAAT GAATGAGAAAGAATCAAGAGTTGACAAAGAGGAGGAAAATGTGGAAAAAATTGATAAGGAGGAAGAAAACGAGGAAGAAAATTGA
AA sequence Show only first row Show all	>Potri.007G020900.1 pacid=42766000 polypeptide=Potri.007G020900.1.p locus=Potri.007G020900 ID=Potri.007G020900.1.v4.1 annot-version=v4.1 MDISSSTETKLATAKIVLSTAASVAATAMLARSIAQDFMPHEFQAYFFYKIRNFFGRFSSQLTMVVDEFDGYTYNEIYGAAETYLGSKISPSTQRLKVSK PEKENEFTVKMDRNEEIVDIFQDVKFKWALVCTHVDSKDHYNSFNHTATLRSEVRSFEVSFPKEHKEMVLESYFPYIVKVAKSMVQEKKTLKIFTVDYEH MYGNLADAWKPVNLDHPATFDTLALDTKDKDKILEDLERFVKRRDYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDIYDLELTEVRCNSDLRKV LIATANRSILVVEDIDCTIELQDRIAEERATPGLGYPPQKQVTLSGLLNFIDGLWSSCGDERIIVFTTNHIEKLDPALLRPGRMDVHVHMSYCTPCGFKF LAANYLGIKDHVLFEEIEELIKTAEVTPAEVAEQLMRSDELETVLKELIEFLVDKKKEKEEKAMAKMNEKESRVDKEEENVEKIDKEEENEEEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.007G020900 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268500 [exp]	2.44	0.9227
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028500 [exp]	2.64	0.9451
AT5G27100		ATGLR2.1	ARABIDOPSIS THALIANA GLUTAMATE...		Potri.006G268450 [exp]	5.47	0.9171
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268400 [exp]	7.07	0.9239
AT1G58420			Uncharacterised conserved prot...		Potri.014G006300 [exp]	13.22	0.8744
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	13.26	0.9094
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	14.49	0.9072
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	14.83	0.9191
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	15.58	0.9092	Pt-IFS1.42
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	16.30	0.9107	11

Compare expression of checked genes

Potri.007G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.