Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36580 868 / 0 AAA-type ATPase family protein (.1) AT2G18330 863 / 0 AAA-type ATPase family protein (.1) AT5G16930 742 / 0 AAA-type ATPase family protein (.1) AT3G03060 735 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G53780 84 / 2e-16 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT4G04180 82 / 4e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 80 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G58290 77 / 7e-15 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G03340 78 / 9e-15 ATPase, AAA-type, CDC48 protein (.1) AT3G19740 78 / 9e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143300 [exp] 755 / 0 AT5G16930 896 / 0.0 AAA-type ATPase family protein (.1) Potri.001G458200 [exp] 754 / 0 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G122300 [exp] 358 / 1e-117 AT4G36580 285 / 2e-89 AAA-type ATPase family protein (.1) Potri.004G004000 [exp] 83 / 2e-16 AT4G04180 682 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G088200 [exp] 79 / 3e-15 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.007G069800 [exp] 79 / 4e-15 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G080600 [exp] 79 / 4e-15 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G007700 [exp] 78 / 4e-15 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022216 [exp] 78 / 5e-15 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028305 [exp] 932 / 0 AT2G18330 920 / 0.0 AAA-type ATPase family protein (.1) Lus10041751 [exp] 917 / 0 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10031787 [exp] 756 / 0 AT3G03060 985 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031211 [exp] 700 / 0 AT3G03060 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010204 [exp] 85 / 7e-17 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 85 / 1e-16 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001402 [exp] 82 / 6e-16 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 82 / 7e-16 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 81 / 2e-15 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 80 / 3e-15 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF12037 [poplar] [flax] DUF3523 Domain of unknown function (DUF3523)
Representative CDS sequence Show only first row Show all	>Potri.007G023900.1 pacid=42765875 polypeptide=Potri.007G023900.1.p locus=Potri.007G023900 ID=Potri.007G023900.1.v4.1 annot-version=v4.1 ATGTCCGCTTCCAGATTATCTGTCGCGGCTGTCGCGGCGGCGGCGGCGGCAGTCTCGACGTTTCAAAGCCGTGCGTATGCCGACTCCTCATTTCGCTTCA ATCCTTTCTCATCCTCTCCTTCACAGAAACAGCAACAGCAGCAAGAAGAGGATCAAACTGCGAACCCGAAATCCGATGCAAAACCCGAACCTGAAGAAAC GAAAGGGGCGGGTTTTGACCCGGAGGCTTTAGAGAGAGGAGCTAAAGCTCTTCGTGAAATCAATAGCTCTCCACACGCTAAACAGGTGTTTGATGTTATG AGGAAGCAAGAGCAGTCACGATTGGCGGAAGTGGCAGCGGAGAAATCTCATTACGAAGTAATTCAAGCTCAAATTGATATTGACAGGCAGCGAAAATTGC ATGAAGAACAAAGAAATCTGATTCAGCAGCAAGCACAGGCGAAGGCACAAATGTTGCGTTACGAGGATGAATTGGCGAGAAAAAGAATGCAGACAGATCA TGAAGCTCAGAAGCGACATAATGTTGAATTGGTTAAGATGCAAGAGGAGTCTTCCATACGAAAAGAACAAGCAAGACGGGCTACTGAGGAGCAGATCCAG GCTCAACAACGTCAGACTGAGAAAGAGAGAGCCGAAATAGAACGGGAAACAATACGAGTTAAAGCCATGGCTGAGGCTGAAGGTCGGGCCCATGAGGCGA AATTGACGGAGGAACATAACAGACGAATGCTAGTTGAACGGATAAATGGCGAAAGAGAAAAATGGCTTGCTGCAATTAATACAACCTTCAGTCACATTGA AGGTGGTTTCAGGACTTTATTAACTGATCGAAATAAGTTGATTATGACTGTTGGAGGAGCTACTGCATTGGCTGCAGGAATTTACACAACTAGAGAAGGT TCTAGAGTTATATGGGGTTATATCAACAGGATATTGGGGCAACCCTCTCTGATCCGAGAATCATCCATGTCTAGATTGCCTTTTTCTAGGGTAATATCTC AAGCGAAAAATAAAGCTATGAAATACAGTACAGCAGCTGGGACAGCATCTCCTTTGGAAAGTAAGAATGGTTTCAGAAACATTATCCTCCATCCATCATT GCATAGGAGAATAGAGCACCTTGCAAGAGCTACGGCAAACACCAAAACTCACCAGGCACCCTTTCGCAATATGATGTTTTATGGACCTCCTGGCACTGGT AAAACTATGGTTGCAAGGGAGATAGCTAGAAAATCGGGTTTGGATTATGCCATGATGACAGGAGGAGATGTTGCACCTCTGGGGGCAGAAGCTGTTACTA AAATCCATGAGATATTTGATTGGGCTAAGAAGTCAAAGAAAGGCTTACTGCTTTTCATTGATGAGGCAGATGCTTTCCTAAGCGAGCGTAACAGTACACA TATGAGTGAAGCTCAGCGAAGTGCTCTAAATGCATTGCTCTTCCGAACTGGGGATCAATCAAGGGACATAGTTCTTGTCCTTGCCACAAACAGGCCAGGT GATCTTGATAGTGCTGTTACTGACCGTATCGACGAAGTGATTGAGTTCCCGCTACCTGGAGAGGAGGAGCGTTTTGAACTGCTCAACCTGTATTTGAGGA ACTACCTTTCTAATGAAGGGGACAGTGGGTCCAGTAAGGGATCTTTGTTCAAGAAGAAGACACAAAAAATAACCATAAAAGATATCTCTGAAGATGTGAT CCGAGAGGCTGCTAAGAAAACAGAAGGGTTCTCTGGTCGTGAGATAGCGAAACTCATGGCTGGTGTCCAAGCAGCTGTCTATGGACGCCCTGATTGTGAT TGTGTATTGGATTCACAGCTATTTAGGGAGATTGTAGATTACAAGGTTGCGGAGCATCACCAGCGGCTAAAACTGGCAGCAGAAGGTGACCACCCAGTTT AG
AA sequence Show only first row Show all	>Potri.007G023900.1 pacid=42765875 polypeptide=Potri.007G023900.1.p locus=Potri.007G023900 ID=Potri.007G023900.1.v4.1 annot-version=v4.1 MSASRLSVAAVAAAAAAVSTFQSRAYADSSFRFNPFSSSPSQKQQQQQEEDQTANPKSDAKPEPEETKGAGFDPEALERGAKALREINSSPHAKQVFDVM RKQEQSRLAEVAAEKSHYEVIQAQIDIDRQRKLHEEQRNLIQQQAQAKAQMLRYEDELARKRMQTDHEAQKRHNVELVKMQEESSIRKEQARRATEEQIQ AQQRQTEKERAEIERETIRVKAMAEAEGRAHEAKLTEEHNRRMLVERINGEREKWLAAINTTFSHIEGGFRTLLTDRNKLIMTVGGATALAAGIYTTREG SRVIWGYINRILGQPSLIRESSMSRLPFSRVISQAKNKAMKYSTAAGTASPLESKNGFRNIILHPSLHRRIEHLARATANTKTHQAPFRNMMFYGPPGTG KTMVAREIARKSGLDYAMMTGGDVAPLGAEAVTKIHEIFDWAKKSKKGLLLFIDEADAFLSERNSTHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG DLDSAVTDRIDEVIEFPLPGEEERFELLNLYLRNYLSNEGDSGSSKGSLFKKKTQKITIKDISEDVIREAAKKTEGFSGREIAKLMAGVQAAVYGRPDCD CVLDSQLFREIVDYKVAEHHQRLKLAAEGDHPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	0	1
AT4G20020			unknown protein		Potri.003G015100 [exp]	2.44	0.9198
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	5.29	0.8995
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	5.83	0.9090
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	6.24	0.8889
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.014G129700 [exp]	6.78	0.8779
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	7.14	0.9057	Pt-TOC75.2
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Potri.017G051500 [exp]	7.34	0.8757
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Potri.012G015400 [exp]	9.38	0.8913
AT5G62290			nucleotide-sensitive chloride ...		Potri.012G128500 [exp]	9.79	0.8898
AT1G75670			DNA-directed RNA polymerases (...		Potri.005G236800 [exp]	12.00	0.8700

Compare expression of checked genes

Potri.007G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.