Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66770 589 / 0 GRAS GRAS family transcription factor (.1) AT3G50650 523 / 0 GRAS SCL7 GRAS family transcription factor (.1) AT3G03450 196 / 3e-55 GRAS RGL2 RGA-like 2 (.1) AT1G50600 191 / 3e-53 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 187 / 1e-52 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 182 / 9e-50 GRAS SCL1 SCARECROW-like 1 (.1) AT2G04890 175 / 7e-49 GRAS SCL21 SCARECROW-like 21 (.1) AT1G63100 180 / 8e-49 GRAS GRAS family transcription factor (.1) AT1G66350 174 / 1e-47 GRAS RGL1 RGA-like 1 (.1) AT5G17490 172 / 8e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123800 [exp] 961 / 0 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.011G131100 [exp] 194 / 2e-54 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.001G361700 [exp] 193 / 3e-54 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.015G008300 [exp] 191 / 3e-54 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G473200 [exp] 187 / 3e-53 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 187 / 3e-53 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G409500 [exp] 191 / 4e-53 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.002G073400 [exp] 188 / 3e-52 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 188 / 3e-52 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041740 [exp] 659 / 0 AT5G66770 631 / 0.0 GRAS family transcription factor (.1) Lus10024014 [exp] 607 / 0 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10035840 [exp] 194 / 2e-54 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 191 / 2e-53 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10033583 [exp] 189 / 3e-52 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10036623 [exp] 187 / 4e-52 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017626 [exp] 185 / 6e-51 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 185 / 3e-50 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10032882 [exp] 178 / 7e-50 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10012554 [exp] 183 / 3e-49 AT1G66350 318 / 1e-99 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.007G026300.1 pacid=42764851 polypeptide=Potri.007G026300.1.p locus=Potri.007G026300 ID=Potri.007G026300.1.v4.1 annot-version=v4.1 ATGGCATATATGTGTGCAGATAGCGGAAATCTAATGGCAATAGCCCAACAAGTTATTAAGCAAAAACAACAACAAGAACAACAGCAGCAACAAAGCCACC ACCACCACCATAACCAACAGCAACAATTTCTTGGCCTAAACCCATTTTCTTTAAATCCTTGGCCGACTAATATAATGTCTGCTAACCCAAACTTGGGTTA CGGGCTCTCGGGTCCGGCTGCTTTCTCTGACCCTTTTCAGAGTGGACAAGAAACAGGTGACCCACCTGTGTTTAGTTTCTCGAACATGGAGCAGCACCAC TCAAGCGGGTTTCGGCTTCCTTATTTTACTGGAGCTGGTGGTGAGTTTGACTCGGATGAGTGGATGGACAGTTTAATGAACGGTGGAGATTCAACGGATA GTTCTAATCTTCCTTCTGGTTGTGACGCGTGGCAAAACAGTACTGATTTTGGGATGTACACTTCTGATCCGTTTAATACTTGCCCCAGTCGACTTACTGT TGGCTGCTCTCCACCGTCTGATCTTAACGGGGTTCTCTCTAATTCGCTCTGGGTCGCCCCATCTCCTCCTCAAGAAATCAAGCCCACAACGTCACCCCCG CCACTGCTTCCGCCAACAGTAAAAAATGAAACCGTCGGAGGGTCAGAGGAAATTGTACAGTTATCTTCCTCGCCGGTTTTGAAAGCGCTTGTTGAGTGCG CTCAACTTGTCGAGTCCAAAGCTGATCAAGCCGTGAAATCGTTGGTTAAGTGCAAGGACTTGGTGAGTGAAAACGGTGATCCAGTTGAGCGAGCTGGTTT CTACTTCGCGGAAGGATTATGCCGAAGAGTTGCTGTAGGAGAGCTTGATGTCTTGAAAAATTTTGATCAGACAAGTGAAGAGTTCACTCTGTCCTATAAA GCTTTGAATGATGCCTGTCCATATTCAAAGTTTGCTCATTTAACAGCAAACCAAGCAATTCTTGAGGCAACTGAGAAAGCAAGCAAGATTCACATAGTTG ATTTTGGTATTGTTCATGGAGTTCAATGGGCTGCTCTTTTACAAGCTTTAGCTACACGTTCAGCTGGAAAACCTGTTAGAATTCGGATCTCAGGTATACC TGCTCCAGTTCTTGGTAAGAATCCAGCTGCCTCTCTTTTAGCTACTGGTAATAGGCTTCTTGATTATGCCAAGCTTCTTGGTTTGAATTTCGAGTTTGAG CCTATTCTGACTCCAATTCAGGAGTTAAATGAATCTTGTTTTCGAGCCGAGCCGGATGAGGTTTTGGCTGTTAATTTCATGCTTCAATTGTATAATTTAT TGGATGAGTCTCCAGTTGCTGTAGAAACTGCTTTAAAGATGGCTAAATCGTTGAACCCGATAATTGTCACTCTTGGTGAATATGAAGCTAGTTTGAACCG GGTTGGGTACTTGACTCGGTTTAAGAATGCTTTGAGATACTACACTGCTGTTTTTGAGTCTCTTGAGCCTAACTTGAGTAGAGACTCACCAGAGAGGCTT CAAGTTGAGAGGTTGTTATTGGGTCAGAGAATTTCTAGTGTTGTAGGGCCAGAGGAGCCTGGAATGAGAAGGGAAAGGATGGAGGATAAAGATCAATGGG GAGTTTTAATGGAAAGTTCAGGTTTTGAATCGGTTTCGCTTAGCCATTATGCAATGAGTCAGGCTAAGATACTCTTATGGTATTGCAATTACAGTGATTT GTATTCTCTTGATGATTCTCAGCCTGGGTTCTTAACTTTAGCTTGGAATGAGGTGCCACTACTCACAGTTTCGTCATGGCGATAA
AA sequence Show only first row Show all	>Potri.007G026300.1 pacid=42764851 polypeptide=Potri.007G026300.1.p locus=Potri.007G026300 ID=Potri.007G026300.1.v4.1 annot-version=v4.1 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQQSHHHHHNQQQQFLGLNPFSLNPWPTNIMSANPNLGYGLSGPAAFSDPFQSGQETGDPPVFSFSNMEQHH SSGFRLPYFTGAGGEFDSDEWMDSLMNGGDSTDSSNLPSGCDAWQNSTDFGMYTSDPFNTCPSRLTVGCSPPSDLNGVLSNSLWVAPSPPQEIKPTTSPP PLLPPTVKNETVGGSEEIVQLSSSPVLKALVECAQLVESKADQAVKSLVKCKDLVSENGDPVERAGFYFAEGLCRRVAVGELDVLKNFDQTSEEFTLSYK ALNDACPYSKFAHLTANQAILEATEKASKIHIVDFGIVHGVQWAALLQALATRSAGKPVRIRISGIPAPVLGKNPAASLLATGNRLLDYAKLLGLNFEFE PILTPIQELNESCFRAEPDEVLAVNFMLQLYNLLDESPVAVETALKMAKSLNPIIVTLGEYEASLNRVGYLTRFKNALRYYTAVFESLEPNLSRDSPERL QVERLLLGQRISSVVGPEEPGMRRERMEDKDQWGVLMESSGFESVSLSHYAMSQAKILLWYCNYSDLYSLDDSQPGFLTLAWNEVPLLTVSSWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66770	GRAS		GRAS family transcription fact...		Potri.007G026300 [exp]	0	1
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.017G009700 [exp]	6.92	0.6835
AT3G11760			unknown protein		Potri.010G244100 [exp]	9.59	0.6853
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025425 [exp]	24.43	0.6605
AT5G12220			las1-like family protein (.1.2...		Potri.001G273600 [exp]	26.22	0.6580
AT1G49000			unknown protein		Potri.012G059500 [exp]	35.39	0.6462
					Potri.006G098800 [exp]	40.91	0.5989
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	44.81	0.6424
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	46.58	0.6321
					Potri.002G049650 [exp]	48.95	0.6219
					Potri.019G129350 [exp]	62.92	0.6267

Compare expression of checked genes

Potri.007G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.