Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37160 772 / 0 SKS15 SKU5 similar 15 (.1) AT2G23630 766 / 0 SKS16 SKU5 similar 16 (.1) AT5G66920 654 / 0 SKS17 SKU5 similar 17 (.1) AT1G41830 584 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G22010 577 / 0 SKS4 SKU5 similar 4 (.1) AT1G76160 569 / 0 SKS5 SKU5 similar 5 (.1) AT1G21860 559 / 0 SKS7 SKU5 similar 7 (.1) AT1G55570 553 / 0 SKS12 SKU5 similar 12 (.1) AT1G21850 547 / 0 SKS8 SKU5 similar 8 (.1) AT1G55560 546 / 0 SKS14 SKU5 similar 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038300 [exp] 694 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.002G227600 [exp] 588 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 585 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 583 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 571 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.005G247700 [exp] 570 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 561 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.001G000500 [exp] 559 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 558 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019642 [exp] 799 / 0 AT4G37160 751 / 0.0 SKU5 similar 15 (.1) Lus10000837 [exp] 756 / 0 AT2G23630 698 / 0.0 SKU5 similar 16 (.1) Lus10016770 [exp] 658 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 657 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10020022 [exp] 577 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 575 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10030045 [exp] 561 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 560 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10010337 [exp] 560 / 0 AT1G55570 803 / 0.0 SKU5 similar 12 (.1) Lus10010338 [exp] 559 / 0 AT1G55570 815 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.007G038200.1 pacid=42766151 polypeptide=Potri.007G038200.1.p locus=Potri.007G038200 ID=Potri.007G038200.1.v4.1 annot-version=v4.1 ATGAGGCAGGCCAGCATCCTGTATTTTTGTGTTGGAATACTGGCTTTCCTGAGTGATACATGGGTGCAAGCAGAAGATCCATATAGATATTACACATGGA CAGTAACATATGGAACACGCACTGTTCTTGATATACCTCAGACGGTTATTCTTATCAATGGACAATTTCCTGGCCCAAATATTGAATGTGTGACTAACGA CAACATAATTGTAAATGTTATTAATAAGTTGAATGAACCTTTCCTCATAACATGGAATGGAATCAAGCAAAGAAGGACTATATGGCAAGATGGAGTGCTA GGGACCAATTGTCCAATCCCTCCAGGCTCCAACTGGACCTACAAATTCCAAGCAAAAGATCAGATTGGAACTTATAACTACTTCCCTACAACTGCAATGC ATAGAGCTGCTGGAGGATTCGGAGGTTTCAACATTGCTTCACGGTCTGTGATATCAATTCCATACCCTATTCCTGTTGCAGAATTTACCCTTCTCATTAG TGATTGGTACAAGGCAGGACATCAGGCATTGAAGCAAAACTTGGACCAGGGCAAAGCTCTTCCTGTTCCTGATGCTCTTCTTATAAATGGGCTTTCTAAA GGTGCAAGCTTCACTGGTGAAAAAGGGCAAACTTACAAGTTCAGGATTTCAAATGCGGGGATTTCAACTTCAATCAACTTCAGAATTCAGGGCCACACAC TGATTCTTGTTGAAGTTGAAGGATCCCATACTATGCAAGAGGTGTACGACTCGCTTGATGTTCACGTTGGTCAATCAGTAACAGTTTTGGTTAAATTAAA TAGTGCAGTCAAGGACTATTTCATAGTTGCCTCTTCTCGTTTCACTAAACCTATTCTCACTACCACTGCCCTTCTTCGCTATGCGGGCTCTAACACCCCA CCCTCTCTGCCATTGCCTATTGGCCCAACTTATCATGTTCACTGGTCTATGAAGCAAGCCAGGACCATCAGGTTGAATTTGACAGCAAATGCAGCCAGGC CAAATCCTCAAGGGTCATTCCATTATGGGACTATAAACGTTGTGAAGAGGTTTGTTTTTGCCAATACAGCAGAGAAGATAAATGGCAAGCTGCGTTATGC TGTTAACGGGATATCTTATGTCGATCCTTCCACCCCATTGCAACTTGCTGACTGGTATAACATCCCCGGTGTCTTTTCCTTGAATACGATGAAGACTACA CCTGTCAATACCCCTGCAGTTCTCGGCACATCCGTGGTTGGAACTGAACTTCATGACTTTGTGGAAATTGTCTTCCAAAACAACGAGAACACGATCCAGT CCTGGCATCTATCCGGAACCAGTTTCTACGTTGTTGGATACGGCGATAATGTGTGGAACCCCAGCATGAGGAAACGCTACAATTTACTTGATGCTGTCTC TAGACACACTGTTCAGGTATATCCCACTGCTTGGACCGCAATATATGTGTCATTGGACAACAAGGGTATGTGGAACTTGAGGTCAGCAATCTGGCCGCGG CGATATCTAGGCCAACAGTTGTACGTCAGGGTTTGGAACAACGAACGCAGCCTATTCACAGAGAGTGATCCCCCTCCAAATACATTGTTCTGTGGCTTGG CTAAACGACCATAG
AA sequence Show only first row Show all	>Potri.007G038200.1 pacid=42766151 polypeptide=Potri.007G038200.1.p locus=Potri.007G038200 ID=Potri.007G038200.1.v4.1 annot-version=v4.1 MRQASILYFCVGILAFLSDTWVQAEDPYRYYTWTVTYGTRTVLDIPQTVILINGQFPGPNIECVTNDNIIVNVINKLNEPFLITWNGIKQRRTIWQDGVL GTNCPIPPGSNWTYKFQAKDQIGTYNYFPTTAMHRAAGGFGGFNIASRSVISIPYPIPVAEFTLLISDWYKAGHQALKQNLDQGKALPVPDALLINGLSK GASFTGEKGQTYKFRISNAGISTSINFRIQGHTLILVEVEGSHTMQEVYDSLDVHVGQSVTVLVKLNSAVKDYFIVASSRFTKPILTTTALLRYAGSNTP PSLPLPIGPTYHVHWSMKQARTIRLNLTANAARPNPQGSFHYGTINVVKRFVFANTAEKINGKLRYAVNGISYVDPSTPLQLADWYNIPGVFSLNTMKTT PVNTPAVLGTSVVGTELHDFVEIVFQNNENTIQSWHLSGTSFYVVGYGDNVWNPSMRKRYNLLDAVSRHTVQVYPTAWTAIYVSLDNKGMWNLRSAIWPR RYLGQQLYVRVWNNERSLFTESDPPPNTLFCGLAKRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	0	1
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203100 [exp]	1.00	0.9837
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	3.00	0.9665
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	3.46	0.9680
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	4.47	0.9607	Pt-ATGSTF13.1
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.012G092200 [exp]	4.58	0.9508
AT1G50720			Stigma-specific Stig1 family p...		Potri.001G356600 [exp]	4.89	0.9506
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	4.89	0.9639
					Potri.018G119000 [exp]	7.21	0.9218
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	7.74	0.9525
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	9.48	0.9467

Compare expression of checked genes

Potri.007G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.