Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 290 / 4e-87 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 219 / 2e-61 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 204 / 3e-56 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT1G33560 204 / 4e-56 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47280 181 / 9e-49 ADR1-L3 ADR1-like 3 (.1) AT5G66890 145 / 9e-38 Leucine-rich repeat (LRR) family protein (.1) AT5G66630 142 / 3e-35 DAR5 DA1-related protein 5 (.1) AT5G43470 103 / 1e-22 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 102 / 3e-22 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039100 [exp] 1201 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039300 [exp] 503 / 4e-169 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 427 / 3e-139 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 345 / 7e-113 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 257 / 6e-75 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 246 / 1e-70 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.007G038800 [exp] 137 / 1e-38 ND / Potri.007G039201 [exp] 126 / 4e-34 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.006G272066 [exp] 90 / 3e-18 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 596 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 441 / 2e-145 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 430 / 1e-139 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10034761 [exp] 375 / 9e-123 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 228 / 6e-63 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 185 / 4e-50 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 166 / 1e-47 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033300 [exp] 115 / 4e-30 AT5G66630 46 / 8e-07 DA1-related protein 5 (.1) Lus10018937 [exp] 91 / 2e-18 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 90 / 2e-18 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF05659 [poplar] [flax] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8
Representative CDS sequence Show only first row Show all	>Potri.007G039000.2 pacid=42766084 polypeptide=Potri.007G039000.2.p locus=Potri.007G039000 ID=Potri.007G039000.2.v4.1 annot-version=v4.1 ATGGCAGGTAAAATTGCTGTATCAGCAGTTGCTGGGGCTGGTTTCGAGATAATTTTTGGTGATTTCTTAAAGATGGTTTTAAAAGCACAGAAAAACAACT CCCAGTTCGAGCCAAGCTTGAAGCGCCTAGAGGAGATGTTGAAAGATATGTCTCCAAATATCAAGAAAATAGAATCTTTCAACGCAGAACTTGATCAACC AAAGCAACTTGAAAGGCTCAAAGGATTAGTGACAAAAGGCAATGATTTAGTCAATAAATGCTCAAAAATCCAGAAATACAACTATTTGAAGAGGCCTATT TATAACAAGAAACTTATCAAGTTAGAGAAGGATATTCGTGATCATATTAGCAGTGTTTTGCAACTTCAGCAGGTAGCAGATACAAAAGAGATTTTGCATA CACAAAATTCGAATTTGGTTGCTGTGAAAGATGTTTCTTATGGAGTAAGACAGTTAAATGATCAAATCGGGAAGTTAAGCATGACTCTAAGCAATGGTAG TAGGGTGGATTCAAGCAAGAGCTATAGTAATACTATTTTAGCTGGTGTGTGCTCACCTCCTCTACTGAAAGTGGATCCTGTTGGGTTGAAGATTCCATTG AGTGATCTGGAGATAAAGCTGCTTAATGATGAGACATCACAGCATATTGTGTTATCTGCTCCTGGAGGATGTGGAAAGACAACGTTGGCTACAGCACTTT GTCAACATGGGAATGTTAAAGATAAATTCAAGAGCAACATCTTCTTTATCAACGTTTCAAAGCTGCGCAACCTGCTGGTCATTGTGAAGACGATATTCCA GCATAAAGAATTCGAGTTACCTGATTTTCGAAGTGAAGAAGATGCAGCTAACCATTTGGAACGTTTGTTCCAGCAGATAGGACCAGATCCAATATTATTG GTCCTTGATGATGTTTGGCCAGTATCGAAATATATTCTTGACAAGCTCAAGTTCCGAATAGAAAATTACAAGATTTTGGTGACATCAAGATATGAATTTC CAAGTTTTGGATCCACATATAAATTGAAAACATTGAATCTTGCAGATGCCATGACCCTTTTTCAGAAATTGGCATTTCCATTGGATCAGCAGTCATATGC TCCAGATCAACAAATTCTAGAGGAGATGGTAAAATGCTGCAGGGGATTTCCTCTAGTCATTTCAGTGGTTGGAAAATCTTTGTGCCGGAAGTCCGCTGCA GAATGGCGTAAGAGAGTTAGGGAATGCTCTAAAGCTGTTTCTATTCTTTCCCACGATGAAATTCTCGATTGTCTTCAAAGCAGTGTGGAAGCCTTCAATG ATGATGTAGTAGCCAAGGAATGTTTCATGGACCTTGGTTCATTCCCTGAAGACCAGAGGATTCCTGCCACTACCCTTATTGATATGTGGGCAGAATTGTA TAACCTAGATGAGGACGACGCCATTGCCAATCTCCATGAACTCTCTGATAGGAATCTGATTGAAGTTGTAGTTACAAGGAAAGATGCAAACGAAGACGAT GGGTCCTATAATGAGCATTTTGTCATGCAGCATGACCTGCTCAGGGAGCTGGCCATCCGTGGAAGCAACTCAGGAAACATTGAGCACAGGAAACGAGTAT TATTGGAGATAATTGAAAATAAAATCCCTGAGTGGTTGATGGAACAAGATCAGCTATCAATCAGGGCCAATCTCTTATCTATCTCAACAGATGAAACATT CTCATCAAGTTGGTCCACCATGCAAGCGCCGGAAGTTGAGGTTTTACTTCTGAATTTTCAGACACAGAAATACTCATTGCCTGAGTTCATAGAAAGAATG AATAAGCTAAAAGTTTTAGTACTTCACAATTACTGGGTTCGTTCCAGCCGAATTGAGCAATTTCCCACTTCTTGGTTCTTTATCAAATCTAAAGAGAATA AGACTGGAAAAGGTTTCCATCCCATCCCTTTTCTTGACTTCAATGAAATGGAGGAAGCTAGAAAAGATGTCCTTGGTTATGTGCAATATTGA
AA sequence Show only first row Show all	>Potri.007G039000.2 pacid=42766084 polypeptide=Potri.007G039000.2.p locus=Potri.007G039000 ID=Potri.007G039000.2.v4.1 annot-version=v4.1 MAGKIAVSAVAGAGFEIIFGDFLKMVLKAQKNNSQFEPSLKRLEEMLKDMSPNIKKIESFNAELDQPKQLERLKGLVTKGNDLVNKCSKIQKYNYLKRPI YNKKLIKLEKDIRDHISSVLQLQQVADTKEILHTQNSNLVAVKDVSYGVRQLNDQIGKLSMTLSNGSRVDSSKSYSNTILAGVCSPPLLKVDPVGLKIPL SDLEIKLLNDETSQHIVLSAPGGCGKTTLATALCQHGNVKDKFKSNIFFINVSKLRNLLVIVKTIFQHKEFELPDFRSEEDAANHLERLFQQIGPDPILL VLDDVWPVSKYILDKLKFRIENYKILVTSRYEFPSFGSTYKLKTLNLADAMTLFQKLAFPLDQQSYAPDQQILEEMVKCCRGFPLVISVVGKSLCRKSAA EWRKRVRECSKAVSILSHDEILDCLQSSVEAFNDDVVAKECFMDLGSFPEDQRIPATTLIDMWAELYNLDEDDAIANLHELSDRNLIEVVVTRKDANEDD GSYNEHFVMQHDLLRELAIRGSNSGNIEHRKRVLLEIIENKIPEWLMEQDQLSIRANLLSISTDETFSSSWSTMQAPEVEVLLLNFQTQKYSLPEFIERM NKLKVLVLHNYWVRSSRIEQFPTSWFFIKSKENKTGKGFHPIPFLDFNEMEEARKDVLGYVQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	1.41	0.9638
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	1.73	0.9397
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	2.00	0.9554
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147000 [exp]	4.89	0.9331
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	5.00	0.9326	RPP13.1
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	5.29	0.9218
AT2G46400	WRKY	ATWRKY46, WRKY4...	WRKY DNA-binding protein 46 (....		Potri.002G168700 [exp]	6.48	0.9233
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	6.78	0.8782	APK2.2
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136400 [exp]	7.48	0.9106
AT3G52870			IQ calmodulin-binding motif fa...		Potri.006G114700 [exp]	8.00	0.8677

Compare expression of checked genes

Potri.007G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.