Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 430 / 5e-139 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 374 / 1e-117 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 343 / 3e-106 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT1G33560 326 / 6e-100 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47280 319 / 8e-99 ADR1-L3 ADR1-like 3 (.1) AT5G66890 275 / 8e-85 Leucine-rich repeat (LRR) family protein (.1) AT5G66630 144 / 2e-35 DAR5 DA1-related protein 5 (.1) AT5G43470 104 / 1e-22 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT2G14080 101 / 8e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039000 [exp] 1202 / 0 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039300 [exp] 687 / 0 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 659 / 0 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 604 / 0 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 380 / 1e-119 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 364 / 1e-113 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.007G038800 [exp] 137 / 3e-38 ND / Potri.007G039201 [exp] 125 / 2e-33 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.005G007001 [exp] 118 / 6e-27 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022464 [exp] 770 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 594 / 0 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 543 / 0 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10034761 [exp] 365 / 7e-118 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 280 / 8e-80 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10016770 [exp] 229 / 3e-64 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10032759 [exp] 185 / 1e-49 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 163 / 4e-46 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033300 [exp] 118 / 5e-31 AT5G66630 46 / 8e-07 DA1-related protein 5 (.1) Lus10020537 [exp] 87 / 4e-17 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.007G039100.1 pacid=42765041 polypeptide=Potri.007G039100.1.p locus=Potri.007G039100 ID=Potri.007G039100.1.v4.1 annot-version=v4.1 ATGGCAGGTCAAATTGCTGTATCAGCAGTTGCTGGGGCTGGTTTCGAGATAATTTTTGGTGATTTCTTAAAGATGGTTTTAAAAGCACAGAAAAACAACT CCCAGTTCGAGCCAAGCTTGAAGCGCCTAGAGGAGATGTTGAAAGATATGGCTCCAAATATCAAGAAAATAGAATCTTTCAACGCAGAACTTGATCAACC AAAGCAACTTGAAAGGCTCAAAGGATTAGTGACAAAAGGCAATGATTTAGTCAATAAATGCTCAAAAATCCAGAAATACAACTATTTGAAGAGGCCTATT TATAACAAGAAACTTCTCAAGTTAGAGAAGGATATTCGTGATCATATTAGCAGTGTTTTGCAACTTCAGGTGGTAGCAGATACAAAAGAGATTTTGCATA CACAAAATTCGAATTTGGTTGCTGTGAAAGATGTTTCTTTTGGAGTAAGACAGTTAAATGATCAAATCGGGAAGTTAAGCATGACTCTAAGCAATGGTAG TAGGGTGGATTCAAGCAAGAGCTATAGTAATACTATTTTAGCTGGTGTGTGCTCACCTCCTCTACTGAAAGTGGATCCTGTTGGGTTGAAGATTCCATTG AGTGATCTGGAGATAAAGCTGCTTAATGATGAGACATCACAGCATATTGTGTTATCTGCTCCTGGAGGATGTGGAAAGACAACGTTGGCTACAGCACTTT GTCAACATGGGAATGTTAAAGATAAATTCAAGAGCAACATCTTCTTTATCAACGTTTCAAAGCTGCGCAACCTGCTGGTCATTGTGAAGATGATATTCCA GCATAAAGAAATCGAGTTACCTGATTTTCGAAGTGAAGAAGATGCAGCTAACCATTTGGAACGTTTGTTCAAGCAGATAGGACCAGATCCAATATTATTG GTCCTTGATGATGTTTGGCCAGTATCGAAATATATTCTTGACAAGCTCAAGTTCCGAATAGAAAATTACAAGATTTTGGTGACATCAAGATATGAATTTC AAAGTTTTGGATCAACATATAAATTGGAAACATTGAATCTTGCAGATGCCATGACCCTTTTTCAGAAATTGGCATTACCATTGGATCAGCAGTCATATGC TCCAGATCAAAAAAGTCTAGAGGAGATGGTAAAATGCTGCAGGGGATTTCCTCTAGTCATTTCAGTGGTTGGAAAATCTTTGTGCCGGAAGTCCGCTGCA GAATGGCGTAAGAGACTTAGGGAATGCTCTAAACCTGCTTCTATTCTTTACGACAATGAAATTCTCGATTGTCTTCAAAGCAGTGTGGAAGCCTTCAATG ATAATGTAGTAGCCAAGGAATGTTTCATGGACCTTGGTTCATTCCCTGAAGACCAGAGGATTCCTGCCACTACCCTTATTGATATGTGGGCAGAATTGTA TAACCTAGATGAGGACGACGCCATTGCCAATCTCCATGAACTCTCTGATAGGAATCTGATTGAAGTTGTAGTTACAAGGAAAGATGCAAACGAAGACGAT GGCTCCTATAATGAGCATTTTGTCTCACAGCATGACCTGCTCAGGGAGCTGGCCATCCGGGAAAGCAACTCAGGAAAAATTGAGCACAGGAAACGAGTAT TATTGGAGATAATTGAAAATAAAATCCCTGAGTGGTTGATGGAACAAGATCAGCTATCAATCAGGGCCAAACTCTTATCTATCTCAACAGATGAAACATT CTCATCAAGTTGGTCCACCATGCAAGCGCCGGAAGTTGAGGTTTTACTTCTGAATTTTCAGACAGAGAAATACTCATTGCCTGAGTTCATAGAAAGAATG AATAAGCTAAAAGTTTTAGTACTTCACAATTATGGGTTCGTTCCAGCCGAATTGAGCAATTTCCCACTTCTTGGTTCTTTATCAAATCTAAAGAGAATAA GACTGGAAAAGGTTTCCATACCATCCCTTTTCTTGACTTCAATGAAATGGAGGAAGCTAGAAAAGATGTCCTTGGTTATGTGCAATATTCATCAAGCTTT TAATAAATCTACCAACAAGATTTCGGATGCATTCCCAAAGTTAGTCGACCTCACCATTGACTACTGCAATGATCTGGAGGAATTGCCAACAGGATTCTGT GATCTTGTCTTGCTAAGAAAGCTCAGTATCACGAATTGTCATAAGCTTTTGGCACTGCCAGAGGACATGGGAAATTTACTTGATTTGGAGGTCCTAAGGC TCAACTCCTGCATCGAATTGACAGAGTTACCGGGCACAATCGGTAGACTTCATAAGTTGCAGATTCTTGACTTATCCGAATGTCTAAGTGTAACAGAATT GCCAGAACAGATCGGTCAGTTAGGATGA
AA sequence Show only first row Show all	>Potri.007G039100.1 pacid=42765041 polypeptide=Potri.007G039100.1.p locus=Potri.007G039100 ID=Potri.007G039100.1.v4.1 annot-version=v4.1 MAGQIAVSAVAGAGFEIIFGDFLKMVLKAQKNNSQFEPSLKRLEEMLKDMAPNIKKIESFNAELDQPKQLERLKGLVTKGNDLVNKCSKIQKYNYLKRPI YNKKLLKLEKDIRDHISSVLQLQVVADTKEILHTQNSNLVAVKDVSFGVRQLNDQIGKLSMTLSNGSRVDSSKSYSNTILAGVCSPPLLKVDPVGLKIPL SDLEIKLLNDETSQHIVLSAPGGCGKTTLATALCQHGNVKDKFKSNIFFINVSKLRNLLVIVKMIFQHKEIELPDFRSEEDAANHLERLFKQIGPDPILL VLDDVWPVSKYILDKLKFRIENYKILVTSRYEFQSFGSTYKLETLNLADAMTLFQKLALPLDQQSYAPDQKSLEEMVKCCRGFPLVISVVGKSLCRKSAA EWRKRLRECSKPASILYDNEILDCLQSSVEAFNDNVVAKECFMDLGSFPEDQRIPATTLIDMWAELYNLDEDDAIANLHELSDRNLIEVVVTRKDANEDD GSYNEHFVSQHDLLRELAIRESNSGKIEHRKRVLLEIIENKIPEWLMEQDQLSIRAKLLSISTDETFSSSWSTMQAPEVEVLLLNFQTEKYSLPEFIERM NKLKVLVLHNYGFVPAELSNFPLLGSLSNLKRIRLEKVSIPSLFLTSMKWRKLEKMSLVMCNIHQAFNKSTNKISDAFPKLVDLTIDYCNDLEELPTGFC DLVLLRKLSITNCHKLLALPEDMGNLLDLEVLRLNSCIELTELPGTIGRLHKLQILDLSECLSVTELPEQIGQLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	1.00	0.9854
AT5G66900			Disease resistance protein (CC...		Potri.007G039000 [exp]	1.41	0.9638
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	1.73	0.9181
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	3.46	0.9104	Pt-EDS1.3
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	4.47	0.9162
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	5.00	0.9129
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	7.93	0.9031
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.014G035700 [exp]	8.12	0.8759	ADR1.2
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	14.28	0.8997	Pt-MPK3.2
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	14.42	0.8946

Compare expression of checked genes

Potri.007G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.