Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37180 216 / 1e-67 GARP Homeodomain-like superfamily protein (.1.2) AT2G03500 177 / 1e-51 GARP Homeodomain-like superfamily protein (.1) AT1G68670 163 / 3e-47 GARP myb-like transcription factor family protein (.1) AT1G25550 152 / 3e-43 GARP myb-like transcription factor family protein (.1) AT1G49560 143 / 8e-40 GARP Homeodomain-like superfamily protein (.1) AT1G13300 141 / 7e-39 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT3G25790 99 / 2e-23 GARP myb-like transcription factor family protein (.1) AT3G10760 75 / 8e-15 GARP Homeodomain-like superfamily protein (.1) AT5G05090 74 / 9e-15 GARP Homeodomain-like superfamily protein (.1) AT2G20400 75 / 1e-14 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134600 [exp] 521 / 0 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.009G106600 [exp] 268 / 4e-87 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 262 / 1e-84 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 169 / 3e-48 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.018G074200 [exp] 158 / 2e-44 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 156 / 2e-44 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 154 / 2e-43 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.013G048000 [exp] 74 / 3e-14 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G034900 [exp] 72 / 4e-14 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009334 [exp] 271 / 2e-89 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 266 / 1e-87 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10012056 [exp] 193 / 3e-58 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 165 / 2e-47 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10043304 [exp] 159 / 2e-44 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 155 / 8e-44 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 144 / 6e-40 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 137 / 5e-37 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10019452 [exp] 139 / 1e-36 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 133 / 7e-36 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G039400.1 pacid=42766692 polypeptide=Potri.007G039400.1.p locus=Potri.007G039400 ID=Potri.007G039400.1.v4.1 annot-version=v4.1 ATGGAGCTTAGCTTGGACTTGAGTTTGGTTTGTGAACCAAAAACAATAAATGAATGTCTTAAAGAGGTTTCGATGGTTAAAGATGGAAGCCAAAAGTTAA CAAAGCTTTATGATTATGTCGAGAGATTAGAAGATGAACGGAGAAAGATTGATGCTTTTAAACGTGAACTCCCTCTTTGCATGCTTCTCTTGAATGAAGC TATTGCGAGATTAAAGGAGGAGGCAATGCAGTGCAGTGAATTGAACGATTTGATACCATTGAAAGGGAATTCCAATGAAGATGGGAATGATAAAAAGAAC TGGATGAGTTCTGTTCAGCTTTGGAACACTAACAACCACTTGGATTGCAAAAAGCAAGACTCGAAATCAGAACCAAAACAGAAAAGTGAAGAAGATGATG ATAGGTCTACTTGTGAGAACCCAGTTCAGTTAGGTGATCATAGCAACAAGGGAGAGGCTTTTGTGCCTTTCAAGGCTCTTTCTGGTTTTGAAGGGAGTAA AAGGAAGGAAGAAAAGGAGGTTGTTTCGCAAGTTACCGGACTTTCTCCTATGACTCCAGTTCCTGATTTGAGTTCCTGCAATTGGACGCGAAAGAGCAAC AATTGTAGTAATCAAACGAAGATACTGAGTAAATCACAACAGCAGGCTTACAGGAAGCAGCGGCGGTGCTGGTCACCAGAGCTTCACCGGCGCTTTGTTG ATGCCCTTCAACAACTTGGTGGTTGTCAAGTGGCCACTCCTAAACAGATCAGAGAGCATATGCAAGTGGATGGCCTCACCAATGATGAAGTTAAAAGCCA CTTGCAAAAATACAGGCTTCATCTCCGTAAAGTCCCAGCATCCCCAGCAGCCCCAGCATCTCAAGATCAATGCAAGGACCCTTCAACAGGTAACATTTCA CAGTCTAATTCTCCGAAAGGATCCCTCCATGCAAGTGGCTCTGCCAAGGCTACCTCTAATACTGGAGGAGATAGCATGGAAGCAGAAGACGATGACAAAT CAGAGAGTCATAGTTGGAATGGTGCGCTTCACAAACCAGGAGAAGCTCATGTATAG
AA sequence Show only first row Show all	>Potri.007G039400.1 pacid=42766692 polypeptide=Potri.007G039400.1.p locus=Potri.007G039400 ID=Potri.007G039400.1.v4.1 annot-version=v4.1 MELSLDLSLVCEPKTINECLKEVSMVKDGSQKLTKLYDYVERLEDERRKIDAFKRELPLCMLLLNEAIARLKEEAMQCSELNDLIPLKGNSNEDGNDKKN WMSSVQLWNTNNHLDCKKQDSKSEPKQKSEEDDDRSTCENPVQLGDHSNKGEAFVPFKALSGFEGSKRKEEKEVVSQVTGLSPMTPVPDLSSCNWTRKSN NCSNQTKILSKSQQQAYRKQRRCWSPELHRRFVDALQQLGGCQVATPKQIREHMQVDGLTNDEVKSHLQKYRLHLRKVPASPAAPASQDQCKDPSTGNIS QSNSPKGSLHASGSAKATSNTGGDSMEAEDDDKSESHSWNGALHKPGEAHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.007G039400 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.015G074600 [exp]	4.89	0.8209
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.004G061500 [exp]	7.48	0.7530
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	15.49	0.7751
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Potri.018G046600 [exp]	27.23	0.7882
					Potri.008G069350 [exp]	31.93	0.7380
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044732 [exp]	33.43	0.7568
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	37.30	0.7929	Pt-AS1.3
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	50.19	0.7856
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	56.55	0.7733
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G049500 [exp]	59.46	0.7829

Compare expression of checked genes

Potri.007G039400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.