Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50560 361 / 6e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 51 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 42 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 42 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136200 [exp] 440 / 5e-158 AT3G50560 375 / 4e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G052500 [exp] 55 / 1e-08 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.008G181600 [exp] 53 / 6e-08 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.016G074000 [exp] 49 / 8e-07 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 47 / 5e-06 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 46 / 1e-05 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 46 / 2e-05 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G228533 [exp] 45 / 2e-05 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 44 / 4e-05 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034626 [exp] 66 / 3e-12 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 60 / 3e-10 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 56 / 7e-09 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026260 [exp] 50 / 6e-07 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021258 [exp] 50 / 9e-07 AT2G47140 177 / 2e-54 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 49 / 2e-06 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 47 / 5e-06 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 45 / 2e-05 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 44 / 5e-05 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10016995 [exp] 44 / 5e-05 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.007G040900.3 pacid=42765141 polypeptide=Potri.007G040900.3.p locus=Potri.007G040900 ID=Potri.007G040900.3.v4.1 annot-version=v4.1 ATGCGGAGCATGACAAGCTCCACCTCCAATAAAGGGATCGCAGCCATTGTAGGCGTTGGACCGAAGCTCGGCCGATCCATTGCCCGCAAGTTTGCCCATG AAGGTTACACTGTTGCCATCCTTGCCCGGGACTTAGGGAGGTTATCAAGATTTGCAGATGAGATAGCAAGGGAGGAGAAAGCTCAAGTTTTTGCCATCAG GATAGACTGCTCGGATTCAAGAAGTGTGAGAGAGGCATTTGAGGGTGTTCTTTCACTTGGCTTTGTAGAAGTACTCGTCTACAATGCCTATCAACCAGCA GTCTCTCCACAACCTACCAACTTCACCGATATTTGCATCGACTCTTTCGTGAAGTCCCTCGCAATCTCCTCCGTCGGTGCGTTCCTTTGCGCCCAACAGG TTCTTCCAGGCATGGTAGAAAGACGGAGAGGGACAATTCTTTTCACCGGCTGTTCAGCTTCTTTAAATGGCATTGCTTGTTTATCTGAACTGTGTTGTGG AAAGTTTGCCTTGAGAGCTCTATCACAATGTTTAGCCAGGGAGTTTCAGTCTCAAGGTGTGCACGTTGCACATGTTATCATCGATGGTGTGATTGGCCCA CCTACACCTAGGGGACCACCAAGCTCTCAGAGAACGTCAGCTGGGGAACAACAGCAACATGGTATGGCCGGTGGAGGTGGAGAGATGATGATGGACCCAG ACTCGCTGGCTCAAACCTACTGGCATTTGCATGTTCAAGGCCGGACTGCTTGGACCCAGGAGATCGACCTCCGTCCCTCTAACTCCATCAACCCCAGATC CTGTTAG
AA sequence Show only first row Show all	>Potri.007G040900.3 pacid=42765141 polypeptide=Potri.007G040900.3.p locus=Potri.007G040900 ID=Potri.007G040900.3.v4.1 annot-version=v4.1 MRSMTSSTSNKGIAAIVGVGPKLGRSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEVLVYNAYQPA VSPQPTNFTDICIDSFVKSLAISSVGAFLCAQQVLPGMVERRRGTILFTGCSASLNGIACLSELCCGKFALRALSQCLAREFQSQGVHVAHVIIDGVIGP PTPRGPPSSQRTSAGEQQQHGMAGGGGEMMMDPDSLAQTYWHLHVQGRTAWTQEIDLRPSNSINPRSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	0	1
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	1.41	0.9777
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	9.79	0.9754
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	14.38	0.9733	Pt-LJPLP.1
AT3G46850			Subtilase family protein (.1)		Potri.009G038001 [exp]	17.32	0.9531
					Potri.007G040950 [exp]	20.12	0.9728
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	22.18	0.9723	GY4.2
					Potri.009G020201 [exp]	23.81	0.9721
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	24.12	0.9393
AT1G53035			unknown protein		Potri.011G119200 [exp]	26.15	0.8791
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033700 [exp]	29.18	0.9171

Compare expression of checked genes

Potri.007G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.