Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28370 92 / 3e-23 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT2G33710 92 / 4e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G44210 89 / 5e-22 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT2G47520 88 / 7e-22 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G15210 89 / 1e-21 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT5G13330 87 / 3e-21 AP2_ERF RAP2.6L related to AP2 6l (.1) AT4G34410 88 / 4e-21 AP2_ERF RRTF1 (Redox Responsive Transcription Factor1 ), ERF109 redox responsive transcription factor 1 (.1) AT5G61890 86 / 3e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G03800 84 / 1e-19 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT5G64750 86 / 2e-19 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101900 [exp] 118 / 1e-32 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 105 / 9e-28 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1) Potri.003G162500 [exp] 92 / 7e-23 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.001G067600 [exp] 92 / 1e-22 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.012G032900 [exp] 92 / 5e-22 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.017G013700 [exp] 89 / 6e-22 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.015G023200 [exp] 92 / 7e-22 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.004G047600 [exp] 89 / 1e-21 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 87 / 4e-21 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014054 [exp] 112 / 2e-30 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003601 [exp] 90 / 1e-21 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 89 / 2e-21 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10021873 [exp] 87 / 3e-21 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 86 / 2e-20 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10031526 [exp] 85 / 4e-20 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10007841 [exp] 84 / 1e-19 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10033664 [exp] 83 / 1e-19 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10016827 [exp] 84 / 2e-19 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10017550 [exp] 84 / 2e-19 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.007G043400.1 pacid=42765808 polypeptide=Potri.007G043400.1.p locus=Potri.007G043400 ID=Potri.007G043400.1.v4.1 annot-version=v4.1 ATGGATGCCTCCTCGTTGAACAATTTGGTTCAAAGACGAGTAGACGAACACAACGCCATAGTATCAGCTCTTAAGCATGTAATCTCAGGTGGTATTGATC ATGGCAGTACTACCGGCCCAATAGAGTACCAGAACCAGCAGCAAATCCTAGCGGCTGATGATGGTAATGTGGGAGGAGGGAGCAGCATAATTTACGTTTC AGATTCTGAGACGTGTCCGGTTTGCAAATTGAGTACCTCCCAATGCCTTGGTTGCGTCTATTTCTCCAGTAGTACTACTGACCAAGAAGGAGGAGGAGGA GGAGGAAATGCCTCAAAGAAGAAAGGTAAAGGGAAAGGGAGGAAGAACAAGTATCGGGGAGTCAGGCAGCGGCCGTGGGGAAAATGGGCAGCGGAGATAA GGGACCCAGGGCAAGGGTCTCGTTTGTGGCTGGGAACTTTTGATAATGCAGAGGATGCTGCTAGAGCTTATGATAAGAAAAATATAGAATTTCGTGGAAT TAGAGCCATAACTAATTTTCCACGATCTGACTACCAAGTTCAAGAAATGGAGCAAGATAAGCCAAACACGACGGGCGAAGCAAAGAATGCCGTAGGGGAA ACTAGTCAGGTTGGTGATATATAG
AA sequence Show only first row Show all	>Potri.007G043400.1 pacid=42765808 polypeptide=Potri.007G043400.1.p locus=Potri.007G043400 ID=Potri.007G043400.1.v4.1 annot-version=v4.1 MDASSLNNLVQRRVDEHNAIVSALKHVISGGIDHGSTTGPIEYQNQQQILAADDGNVGGGSSIIYVSDSETCPVCKLSTSQCLGCVYFSSSTTDQEGGGG GGNASKKKGKGKGRKNKYRGVRQRPWGKWAAEIRDPGQGSRLWLGTFDNAEDAARAYDKKNIEFRGIRAITNFPRSDYQVQEMEQDKPNTTGEAKNAVGE TSQVGDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28370	AP2_ERF	AtERF11	ERF domain protein 11 (.1)		Potri.007G043400 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.018G146100 [exp]	1.41	0.8008
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	2.00	0.7670
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	4.89	0.7434
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	14.24	0.7301
AT5G58375			Methyltransferase-related prot...		Potri.019G127900 [exp]	22.04	0.6910
AT4G32480			Protein of unknown function (D...		Potri.019G099600 [exp]	24.37	0.7212
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	25.03	0.6856
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Potri.001G080600 [exp]	26.53	0.6811
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	27.38	0.6776
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	28.72	0.6580

Compare expression of checked genes

Potri.007G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.