Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 273 / 3e-90 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 266 / 7e-88 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 246 / 3e-80 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 228 / 4e-73 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 164 / 2e-47 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 161 / 4e-46 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 152 / 3e-43 MYB ATMYB25 myb domain protein 25 (.1) AT3G09370 131 / 3e-34 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT1G69560 128 / 3e-34 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 126 / 4e-34 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142600 [exp] 434 / 3e-153 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 292 / 3e-98 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 273 / 8e-91 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.009G096000 [exp] 197 / 6e-62 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.001G300200 [exp] 192 / 9e-60 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G035100 [exp] 189 / 1e-58 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.002G128900 [exp] 181 / 2e-55 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.008G070900 [exp] 179 / 1e-54 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.010G195000 [exp] 167 / 2e-48 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010260 [exp] 325 / 1e-110 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10030336 [exp] 320 / 3e-108 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10010238 [exp] 273 / 2e-90 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 266 / 4e-88 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10014103 [exp] 206 / 2e-65 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10007503 [exp] 185 / 4e-57 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10040940 [exp] 183 / 1e-56 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10021762 [exp] 182 / 9e-56 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10032764 [exp] 181 / 4e-55 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10028979 [exp] 179 / 1e-54 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G048900.5 pacid=42766797 polypeptide=Potri.007G048900.5.p locus=Potri.007G048900 ID=Potri.007G048900.5.v4.1 annot-version=v4.1 ATGGCTATTACTAGAAAGGAAATGGATAGGATCAAGGGGCCATGGAGTCCAGAAGAAGATGAGGCGTTACAGAAACTGGTTCAAAAACATGGTGCAAGAA ACTGGTCATTGATAAGCAAATCAATCCCTGGCCGATCAGGAAAATCATGCAGGCTCCGGTGGTGCAACCAGCTCTCACCTCAGGTCGAGCACCGACCCTT CACTCCCGATGAAGATGACACGATAATCCGAGCCCACGCTCGTTTCGGCAACAAGTGGGCTACAATTGCTCGTCTCCTCTACGGGCGCACCGATAACGCT ATTAAAAACCACTGGAACTCCACTCTGAAACGCAAGTGCTCTTCAATGGCAGAGGATGGCAATTTCTGCAACCGCGAAGGGTATGATGGTAATTTGGATG GTGATAACACGCAGCCCTTGAAGAGATCCGTGAGTGCAGGTTCTGGTGTGCCTGTTTCTACGGGGCTCTATATGAGCCCGGGCAGCCCCTCTGGATCTGA CGTCAGCGACTCCAGCTTGCCCGGTTTATCCTCCTCTTATAATTATAATATATACCGGCCCGTTGCCCGAACCGGAGCGGTTATGCCTCCAGTTGAAACG ACGTCGTCTTCTGATAACAACAACGACCCGCCTACCTCGCTGAGCTTGTCTCTACCTGGGGCCGATTCCTCTGAGGTGTCCAACCAAGTCGGCGAGCCAT CTCAGCTGCCCAAATCCAATACAGTGACACCCCTTTTGACGGGAAGGAACGCACCGGCTCAGGAGGTGTCCCCGGCAGTGGGCGGACTGTCCGGGTCTGT GGGGTTCAATACAGAGTTTATGTCGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAATTATATGATGGAACATAGTGGTGTAGGTGGGGGTATGTGT TATCAGGGCATGAGTGGGGAGGGGTTTAGGAATGTCGCAGTGAATAATAGGGTTGGGTTGGTAAAATTAAGTAGTGAAAAATGGACAGGGTAG
AA sequence Show only first row Show all	>Potri.007G048900.5 pacid=42766797 polypeptide=Potri.007G048900.5.p locus=Potri.007G048900 ID=Potri.007G048900.5.v4.1 annot-version=v4.1 MAITRKEMDRIKGPWSPEEDEALQKLVQKHGARNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPDEDDTIIRAHARFGNKWATIARLLYGRTDNA IKNHWNSTLKRKCSSMAEDGNFCNREGYDGNLDGDNTQPLKRSVSAGSGVPVSTGLYMSPGSPSGSDVSDSSLPGLSSSYNYNIYRPVARTGAVMPPVET TSSSDNNNDPPTSLSLSLPGADSSEVSNQVGEPSQLPKSNTVTPLLTGRNAPAQEVSPAVGGLSGSVGFNTEFMSVMQEMIRKEVRNYMMEHSGVGGGMC YQGMSGEGFRNVAVNNRVGLVKLSSEKWTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	0	1
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.006G124200 [exp]	1.00	0.7924
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	1.41	0.7802	Pt-CRCK3.1
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	3.46	0.7090
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	7.48	0.7390
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	21.56	0.7705
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	23.06	0.6686
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	28.98	0.6713
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	32.61	0.7041	Pt-CNGC.2
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	34.75	0.7251
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.002G196200 [exp]	35.74	0.7228

Compare expression of checked genes

Potri.007G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.