Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NRAMP3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23150 766 / 0 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT1G47240 754 / 0 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT5G67330 748 / 0 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT4G18790 649 / 0 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT1G15960 305 / 6e-98 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 301 / 2e-96 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT5G03280 131 / 4e-32 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050700 [exp] 833 / 0 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G121000 [exp] 714 / 0 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.002G080400 [exp] 321 / 9e-104 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 319 / 9e-103 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 317 / 3e-102 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 306 / 5e-98 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 306 / 5e-98 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.016G090800 [exp] 128 / 3e-31 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.006G127100 [exp] 128 / 5e-31 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010395 [exp] 775 / 0 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 773 / 0 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10032853 [exp] 733 / 0 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 731 / 0 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10024069 [exp] 317 / 4e-102 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 317 / 6e-102 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10018132 [exp] 307 / 2e-98 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 305 / 1e-97 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10013803 [exp] 125 / 4e-30 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 122 / 4e-29 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01566 [poplar] [flax] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Potri.007G050600.1 pacid=42765741 polypeptide=Potri.007G050600.1.p locus=Potri.007G050600 ID=Potri.007G050600.1.v4.1 annot-version=v4.1 ATGCCTGTAGAAGAAAACTACCAACCTTTATTGCAAGAAGAAGAAGAAAGAGCTTATGATTCTGATGAGAAAGTGCTCATAATTGGGGTTGATTCTGACA CGGAAAGCGGTGGCTCAACGGTGTTGCCACCGTTTTCATGGAAAAAGTTATGGTTGTTTACTGGTCCTGGGTTTTTAATGTCCATTGCGTTTTTGGATCC TGGGAATTTGGAAGGGGATCTTCAGGCTGGTGCAATCGCAGGCTACTCTTTGCTTTGGCTTCTTTTATGGGCTACTGCTATGGGGTTGTTGGTGCAGTTG CTTTCAGCGAGGCTTGGAGTGGCTACAGGGAGGCATTTAGCTGAGCTGTGTAGAGAAGAGTATCCAACCTGGGCTTCAATGGTTTTGTGGATTATGGCTG AGTTGGCTTTGATTGGTGCTGATATACAAGAGGTTATTGGAAGTGCTATTGCTATTAAGATCTTGAGTAATGGGTTTGTGCCTTTGTGGGCTGGTGTTAC TATTACTGCTTGTGATTGCTTCATCTTCCTATTTCTAGAGAACTACGGTGTGAGAAAATTGGAGGCTGTATTTGCGGTCCTTATTGGAATAATGGCAGTT ACATTTGGATGGATGTTTGCAGATGCAAAACCCAGTGCCTCCGAACTTTTTCTGGGTATCTTAATTCCAAAACTTAGCTCCAGAACAATACAACAGGCTG TTGGAGTTGTGGGTTGCATTATCATGCCTCACAATGTGTTCTTGCATTCTGCTCTTGTACAGTCAAGGGAGATCGACCACAATAAGAAAGACCGGGTTCA AGAAGCTCTCAGATACTACTCCATAGAGTCAACCACTGCCCTTGTAATATCGTTCGTAATCAATTTGTTTGTGACGACTGTTTTTGCTAAAGGTTTCTAC GGGACAGAACTAGCCAATAGTATTGGCCTTGTAAATGCAGGGCAATATCTTCAAGACAAATACGGGGGTGGATTTTTCCCAATTTTATACATCTGGGGTA TTGGATTATTAGCAGCTGGCCAAAGCAGCACCATTACTGGCACTTATGCAGGACAGTTTATCATGGGAGGTTTCCTGAACTTGAGGTTAAAGAAATGGCT TAGGGCATTGATCACTCGAAGCTGTGCTATCATCCCAACTATGATTGTTGCACTTGTTTTTGATACCTCCGAAGACTCACTAGATGTTCTGAATGAATGG CTAAATGTGCTGCAGTCAATACAGATTCCTTTTGCACTCATCCCTCTTCTCTGCTTAGTATCCAAGGAGCAAATCATGGGCACTTTCAAAATCGGCCCCA TTCTTAAGATGGTAGCTTGGCTTGTGGCTGCCCTGGTGATGGTAATCAATGGTTACCTTTTGCTCGACTTTTTCTTCAATGAAGTGACCGGAGTAGCGTT TACCACTGTAGTATGCGGTTTTACAGGTGCATATGTTGCGTTTATAATTTATCTCATTTCCAGGGGCTTTACATGTTTCTCCCGGTGCTGTCCATCTAAA CAGATAGAAGTAGAGTGA
AA sequence Show only first row Show all	>Potri.007G050600.1 pacid=42765741 polypeptide=Potri.007G050600.1.p locus=Potri.007G050600 ID=Potri.007G050600.1.v4.1 annot-version=v4.1 MPVEENYQPLLQEEEERAYDSDEKVLIIGVDSDTESGGSTVLPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLLWATAMGLLVQL LSARLGVATGRHLAELCREEYPTWASMVLWIMAELALIGADIQEVIGSAIAIKILSNGFVPLWAGVTITACDCFIFLFLENYGVRKLEAVFAVLIGIMAV TFGWMFADAKPSASELFLGILIPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSREIDHNKKDRVQEALRYYSIESTTALVISFVINLFVTTVFAKGFY GTELANSIGLVNAGQYLQDKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIIPTMIVALVFDTSEDSLDVLNEW LNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGPILKMVAWLVAALVMVINGYLLLDFFFNEVTGVAFTTVVCGFTGAYVAFIIYLISRGFTCFSRCCPSK QIEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050600 [exp]	0	1	Pt-NRAMP3.1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	9.27	0.7995
AT3G04300			RmlC-like cupins superfamily p...		Potri.002G254800 [exp]	20.19	0.7899
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.003G148200 [exp]	22.29	0.7875
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Potri.003G140900 [exp]	25.80	0.7511	RHD1.2
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.005G240200 [exp]	32.90	0.7407	Pt-CYP1.1
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	34.95	0.7763
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G049000 [exp]	36.94	0.7933
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	37.46	0.7869
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	37.62	0.7874
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	39.62	0.7840	PtrcGrx_C1.1

Compare expression of checked genes

Potri.007G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.