Plant FIBer expression Database

Potri.007G061781 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG00160 322 / 2e-112 ATMG00160.1, COX2 cytochrome oxidase 2 (.1)
AT2G07695 86 / 1e-19 Cytochrome C oxidase subunit II-like, transmembrane domain (.1)
ATMG01280 86 / 1e-19 ORF291, ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0026 CU_oxidase PF00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain
CL0026 PF02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain
Representative CDS sequence
>Potri.007G061781.1 pacid=42765994 polypeptide=Potri.007G061781.1.p locus=Potri.007G061781 ID=Potri.007G061781.1.v4.1 annot-version=v4.1
ATGATGCAAGGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTTATTTTGGTTTTCGTATTATGGATCTTGGTTGGCGCTTTATGGCATT
TCCACTATAAAAAGAATCCAATCCCGCAACGGATTGTTCATGGAACTACTATTGAGATTCTTTGGACCATTTTTCCTAGTCTCATCCTTATGTTCATTGC
TATACCATCATTTGCTCTCTTATACGCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATGAAAGCTATTGGACATCAATGGTATTGGACTTATGAG
TATTCAGACTATAATAGTTCCGATGAGGAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGATGATTTAGAATTGGGTCAATTACGTTTATTAGAAG
TTGACAATAGATTGGTTGTGCCAGCCAATAGTCATCTACGTCTTCTTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTCCCTTCCTTAGGTGTCAA
ATGCGATGCTGTACCTGGTCGTTTAAATCAGATCTCTATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACGAATCAT
GCTTTTATGCCGATCGTCGTAGAAGCTCTTTCTTTGAAAGATTATTGTGATTGGGTAGACATTCATCAATTTTAA
AA sequence
>Potri.007G061781.1 pacid=42765994 polypeptide=Potri.007G061781.1.p locus=Potri.007G061781 ID=Potri.007G061781.1.v4.1 annot-version=v4.1
MMQGIMDLHHDIFFFLILILVFVLWILVGALWHFHYKKNPIPQRIVHGTTIEILWTIFPSLILMFIAIPSFALLYAMDEVVVDPAITMKAIGHQWYWTYE
YSDYNSSDEESLTFDSYMIPEDDLELGQLRLLEVDNRLVVPANSHLRLLVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNH
AFMPIVVEALSLKDYCDWVDIHQF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATMG00160 ATMG00160.1, CO... cytochrome oxidase 2 (.1) Potri.007G061781
[exp]
0 1
ATMG00510 ATMG00510.1, NA... NADH dehydrogenase subunit 7 (... Potri.007G071350
[exp]
1.00 0.9803
ATCG00510 ATCG00510.1, PS... photsystem I subunit I (.1) Potri.016G094033
[exp]
6.48 0.9506
ATMG00410 ATMG00410.1, AT... ATPase subunit 6-1 (.1) Potri.014G168000
[exp]
10.24 0.9628
AT2G07751 NADH:ubiquinone/plastoquinone ... Potri.007G062001
[exp]
10.48 0.9592
Potri.007G062081
[exp]
10.67 0.9377
ATMG00650 ATMG00650.1, NA... NADH dehydrogenase subunit 4L ... Potri.007G062622
[exp]
12.48 0.9613
Potri.007G061901
[exp]
12.48 0.9334
ATMG00730 ATMG00730.1, CO... cytochrome c oxidase subunit 3... Potri.007G062402
[exp]
14.14 0.9338
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062482
[exp]
15.87 0.9567
ATMG00650 ATMG00650.1, NA... NADH dehydrogenase subunit 4L ... Potri.007G061661
[exp]
18.33 0.9566

Potri.007G061781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.