Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 575 / 0 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT2G04890 204 / 2e-60 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 194 / 6e-55 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 188 / 2e-53 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 189 / 4e-53 GRAS SCL1 SCARECROW-like 1 (.1) AT3G49950 176 / 7e-50 GRAS GRAS family transcription factor (.1) AT3G03450 178 / 1e-49 GRAS RGL2 RGA-like 2 (.1) AT1G66350 174 / 4e-48 GRAS RGL1 RGA-like 1 (.1) AT5G17490 171 / 5e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 167 / 2e-45 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019900 [exp] 450 / 1e-155 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 447 / 6e-155 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 201 / 5e-59 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 199 / 3e-58 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 201 / 2e-57 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 200 / 3e-57 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 191 / 5e-54 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 190 / 5e-54 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 185 / 5e-52 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025200 [exp] 514 / 1e-180 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 511 / 2e-178 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 503 / 1e-175 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 504 / 2e-174 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 414 / 2e-140 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10042776 [exp] 189 / 2e-53 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 188 / 9e-53 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10012323 [exp] 186 / 2e-52 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 186 / 4e-52 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10039709 [exp] 182 / 2e-51 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.007G063300.1 pacid=42766493 polypeptide=Potri.007G063300.1.p locus=Potri.007G063300 ID=Potri.007G063300.1.v4.1 annot-version=v4.1 ATGGATACCTTGTTTAGGCTAGTTAGTCTCCAACAACAATCTGAACAATCTTTCAACTCTACTAGCAGAACCTCTAGTAGCTCTAGATCATCAAGACAAA ACAACAACCACCACCATCATCACTATCAACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAGGAAGACTTCTCTTCATCTTCTTCTAAGCACTA CTATCCTCCTTATCACCACAACCAACAACAACAACATCAACACCAAACCACCACCACCACTCCTACCACTACTACCACCAACACTAGCACCCCTTCTACT CACCATGTCCTTGATTCCGCTGACTTCTCTTTCTCCCCTTCTCATGACCTAAACTTTGAATTTTCCGGCAAGTGGGTCACCGATATCCTCCTTGAATCTG CACATGCCATCGCGGATAAAAACAGCGCTCGTCTCCAGCAATTGATGTGGATGCTTAATGAGCTTGGTTCACCTTATGGTGACACAGAGCAAAAACTTGC TTCTTATTTTCTCCAAGCTTTGTTTAGCCGCATGAACGACTCCGGCGAGAGATGCTACCGTACTTTAGCTTCAGCATCAGAGAAAACTTGCTCTTTTGAT TCCACAAGGAAAATGGTATTAAAGTTTCAAGAGGTGAGTCCTTGGACTACTTTTGGTCACGTATCTTGTAATGGCGCAATTATGGAAGCATTTGAAGGTG AAAGCAAATTGCATATTATTGATATTAGTAACACATATTGTACCCAATGGCCTACTTTGCTCGAAGCCCTAGCAACTCGCACTGATGAGACACCACACTT GAAGTTAACCACCGTAGTGGCTAGCAAAAGTAGTGGTAATAATATTGGTTTAACTAGTACAGGAGGTTTAGCTTCAGTTCATAAGGTAATGAAAGAAATT GGCAACAGAATGGAAAAATTTGCCAGGCTTATGGGAGTCCCATTTAAGTTTAATGTTATCCACCATGCTGGTGATTTATGTGACCTAAACTTAGCTGAAT TGGATGTTAAAGATGATGAGGCTCTTGCTATCAACTGTGTTGGTGCTTTACACTCAATCACTCCAGCTTCTCGTCGCCGAGATTATGTTATATCTAGTTT TAGAACATTGCAACCAAGAATCATTACTGTTGTTGAAGAAGAAGCTGATCTTGATGGTCTGGATTTTGTCAAGGGTTTTCAAGAATGTTTAAGATGGTTT AGGGTTTACTTTGAATCATTGGATGAGAGCTTTCCAAGAACCAGTAACGAACAGTTGATGCTTGAAAGAGCAGCAGGCCGCGCTATCGTTGACTTAGTGG CATGTCCTCCATCTGATTCGATCGAAAGGCGGGAAACAGCCACGCGCTGGTCTGGACGCCTCCATTCATGTGGTTTTAGCCCGATAATTTTCAGTGATGA GGTTTGTGATGATGTACGCGCCTTATTGAGGAGGTATAAGGAGGGTTGGTCAATGACACAGTGCGGGGATGCCGGAATATTCTTGTGCTGGAAGGAACAG CCGGTGGTGTGGGCTAGTGCATGGAGGCCCTGA
AA sequence Show only first row Show all	>Potri.007G063300.1 pacid=42766493 polypeptide=Potri.007G063300.1.p locus=Potri.007G063300 ID=Potri.007G063300.1.v4.1 annot-version=v4.1 MDTLFRLVSLQQQSEQSFNSTSRTSSSSRSSRQNNNHHHHHYQQEDEECFNFFMDEEDFSSSSSKHYYPPYHHNQQQQHQHQTTTTTPTTTTTNTSTPST HHVLDSADFSFSPSHDLNFEFSGKWVTDILLESAHAIADKNSARLQQLMWMLNELGSPYGDTEQKLASYFLQALFSRMNDSGERCYRTLASASEKTCSFD STRKMVLKFQEVSPWTTFGHVSCNGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLKLTTVVASKSSGNNIGLTSTGGLASVHKVMKEI GNRMEKFARLMGVPFKFNVIHHAGDLCDLNLAELDVKDDEALAINCVGALHSITPASRRRDYVISSFRTLQPRIITVVEEEADLDGLDFVKGFQECLRWF RVYFESLDESFPRTSNEQLMLERAAGRAIVDLVACPPSDSIERRETATRWSGRLHSCGFSPIIFSDEVCDDVRALLRRYKEGWSMTQCGDAGIFLCWKEQ PVVWASAWRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G063300 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.013G040600 [exp]	7.00	0.7753
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.002G009300 [exp]	11.31	0.7700
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	15.09	0.7515
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	16.79	0.7387
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.017G010200 [exp]	20.61	0.6671	MPK6.2
AT1G11120			unknown protein		Potri.004G037200 [exp]	23.74	0.7680
AT2G28270			Cysteine/Histidine-rich C1 dom...		Potri.001G229900 [exp]	34.58	0.7129
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	35.46	0.7182
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	35.49	0.7194
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	36.33	0.7326

Compare expression of checked genes

Potri.007G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.