Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16490 228 / 8e-73 MYB ATMYB58 myb domain protein 58 (.1) AT1G56160 228 / 9e-73 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT1G79180 226 / 8e-72 MYB ATMYB63 myb domain protein 63 (.1) AT3G23250 204 / 1e-63 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G12820 202 / 3e-63 MYB ATMYB10 myb domain protein 10 (.1) AT2G31180 198 / 8e-62 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G02940 197 / 3e-60 MYB ATMYB107 myb domain protein 107 (.1) AT1G06180 192 / 1e-59 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT5G16770 194 / 4e-59 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G15310 189 / 3e-57 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096600 [exp] 525 / 0 AT1G16490 232 / 1e-74 myb domain protein 58 (.1) Potri.005G224100 [exp] 201 / 2e-62 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 199 / 2e-61 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 198 / 2e-61 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G074500 [exp] 198 / 2e-60 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 196 / 8e-60 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G018200 [exp] 191 / 3e-59 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G164900 [exp] 194 / 4e-59 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.004G033100 [exp] 194 / 9e-59 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041145 [exp] 196 / 5e-61 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021871 [exp] 195 / 9e-61 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10021185 [exp] 194 / 5e-60 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 193 / 1e-59 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10003557 [exp] 191 / 6e-58 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 190 / 7e-58 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10041142 [exp] 190 / 1e-57 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 189 / 2e-57 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10022021 [exp] 183 / 1e-56 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10033003 [exp] 189 / 3e-56 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G067600.1 pacid=42766843 polypeptide=Potri.007G067600.1.p locus=Potri.007G067600 ID=Potri.007G067600.1.v4.1 annot-version=v4.1 ATGGGAAAAGGGAGAGCACCATGTTGTGATAAGAGTCAAGTGAAGAGAGGACCATGGAGTCCTGCTGAGGACTTGAGGCTTATAGCTTTTATTCAGAAAC ATGGGCATGAAAACTGGAGGGCTCTTCCTAAACAAGCTGGGTTGCTGCGATGCGGAAAAAGTTGTCGATTGAGATGGATTAATTACCTGAGACCTGACGT TAAGCGTGGTAACTTCAGCGAAGTGGAAGAAGACACCATAATTAAGCTACATCAAACTTTGGGAAACAAGTGGTCAAAGATTGCATCTCATTTGCCTGGA AGAACAGACAATGAGATTAAGAATGTGTGGAATACTCACTTAAAGAAAAAACTGGCATGCAAAGATGATGGTGAACATTCTGAAGGAGATGAGTCAAAGG GATCCTCCTCAACTTCCTCGTCCTCCTCTTCATCTAGTACGATCATGTCAAGTGGAAAAAGAGCTTTGGAAATGGAACTTGATGAACAAAAAAATCAAGG GTTCTCAACGCAGAAGCCTCGCATCCTAGAGAACGAAGAGGACTCGTCACCAAGGGGAGTGTCTAATAATCAGTTTAAACCAGCCATGAAACCAAACGAA TTATCAAGTTCCTCTTTTTCTAGTAACAATTCCAGCATCACCAACTCTAGTCAAGCTGATGTTTCCGAGCCAGATGGTGAAAAAACGGGTTCGTTTTTTA ACTTTAGAGGACGTTATAATGTTCGCAATTCACTGGAGGAGGTAAACAAACCAGAAGAAATCGTGACCGAAATCCCATTCGAGTCGGATTACGATTTTTG GAACATGTTGGACAGCTTAAGTTCCTTCCAGACCAGTGGAATTCAGCTGCAAAATGTTGAAGCTGGCCAGAGCTCAAGATTTGGAGATGCATATAATATG GGAGAAGTTGAAAATAAGAAGTGGCTCCGTTACTTGGAGAATGAGCTTGGTCTCGATGCAACCAAAGATGAAAACCAGAATTTATCGAAGAATGCTGCGG AGAGTACAATAGTCCCTGAGAATTTTCAGCATGACATGCCACTCAAGCCAGCGGAAGTCCATCCAGGGACAGTTGAAAATTTTCATTTGTGGCCTTCTTT ATGA
AA sequence Show only first row Show all	>Potri.007G067600.1 pacid=42766843 polypeptide=Potri.007G067600.1.p locus=Potri.007G067600 ID=Potri.007G067600.1.v4.1 annot-version=v4.1 MGKGRAPCCDKSQVKRGPWSPAEDLRLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSEVEEDTIIKLHQTLGNKWSKIASHLPG RTDNEIKNVWNTHLKKKLACKDDGEHSEGDESKGSSSTSSSSSSSSTIMSSGKRALEMELDEQKNQGFSTQKPRILENEEDSSPRGVSNNQFKPAMKPNE LSSSSFSSNNSSITNSSQADVSEPDGEKTGSFFNFRGRYNVRNSLEEVNKPEEIVTEIPFESDYDFWNMLDSLSSFQTSGIQLQNVEAGQSSRFGDAYNM GEVENKKWLRYLENELGLDATKDENQNLSKNAAESTIVPENFQHDMPLKPAEVHPGTVENFHLWPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.007G067600 [exp]	0	1
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146100 [exp]	2.23	0.7737
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	3.87	0.7553
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.018G109500 [exp]	7.14	0.7566
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005800 [exp]	7.41	0.7289
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Potri.019G083600 [exp]	8.48	0.6973
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G006200 [exp]	9.79	0.7375
AT3G62860			alpha/beta-Hydrolases superfam...		Potri.014G129000 [exp]	10.00	0.7566
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.001G352400 [exp]	14.83	0.7626
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.002G059100 [exp]	17.14	0.6982
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	23.81	0.6930	ACA3.2

Compare expression of checked genes

Potri.007G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.