Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30070 197 / 6e-59 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT3G02050 186 / 2e-54 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT5G14880 180 / 3e-52 Potassium transporter family protein (.1) AT4G23640 161 / 1e-45 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G31120 159 / 1e-44 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT1G60160 157 / 4e-44 Potassium transporter family protein (.1) AT4G33530 157 / 5e-44 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT2G35060 154 / 5e-43 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT5G09400 144 / 3e-39 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT2G40540 140 / 4e-38 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095900 [exp] 375 / 7e-127 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 253 / 2e-79 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.010G094300 [exp] 204 / 3e-61 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.014G144900 [exp] 203 / 1e-60 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 202 / 6e-60 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.008G147400 [exp] 199 / 2e-59 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.009G073500 [exp] 179 / 6e-52 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.015G034200 [exp] 170 / 1e-48 AT2G40540 741 / 0.0 potassium transporter 2 (.1.2) Potri.012G043501 [exp] 170 / 1e-48 AT2G40540 726 / 0.0 potassium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012992 [exp] 197 / 1e-58 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030857 [exp] 194 / 2e-57 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10032154 [exp] 188 / 8e-56 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10030632 [exp] 186 / 3e-54 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 182 / 7e-53 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10014531 [exp] 171 / 7e-49 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10024709 [exp] 166 / 2e-47 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 166 / 5e-47 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10038361 [exp] 166 / 6e-47 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10018324 [exp] 162 / 8e-46 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.007G068200.2 pacid=42766539 polypeptide=Potri.007G068200.2.p locus=Potri.007G068200 ID=Potri.007G068200.2.v4.1 annot-version=v4.1 ATGTCAGTATGGCATTATGGGGAATCGAAAAAGCAGGCATTTGAGCTGGAGAATAAGGTTAGCTTGGACAGCCTTTTGAGCCTGGGAATAGCAAGGGTTC CTGGAATTTGCCTAGTGTGCTCCCATGTGACCTCTGGTGTCCCGCCAATGTTCGCACATTTTGTCACCAACTTTCCTGCATTCCATCAGATTCTTATCTT TGTAACCGTTCAATTTTTGATGATCCCAAAAGTTCCAGTCATTGATCGTTTCCATGTTTCAAGGATTGGTCCGCCAGATGTCCCTCTATTCCGGTGCATT GTGCGGTATGGATACAAGGACATCAGGGACAGCTTTGAATTTGAAACCCAACTGATTGAAAAGATAACAGTGTTCTTGAAATGCGAATTGAATTGCAAGG AAATCCTAATACTAGAGCAGTCAGTGCTTGGTGCAAAAGCACAGAGAAGAAAAGAGCTGCGGTTACAATATCTGCAGGAAGCAAGTGAAGATGTAAATGA ACTCATGGAGGCAAAGGAAGCTGGTGTTACTTTCATGATGGGACATACTTGTGTTATAGCTAGAGAGGCATCATGTATTCTGAAGAAGCTTGTGATTAAC TATGTCTATGGATTCCTTAGACGCAATAGCCGGTGCCCTGCAACCTCATTTGGGATCCCACACTCCGCATTGATTGAAGTTGGTATGGTTTATCGTGTAT AA
AA sequence Show only first row Show all	>Potri.007G068200.2 pacid=42766539 polypeptide=Potri.007G068200.2.p locus=Potri.007G068200 ID=Potri.007G068200.2.v4.1 annot-version=v4.1 MSVWHYGESKKQAFELENKVSLDSLLSLGIARVPGICLVCSHVTSGVPPMFAHFVTNFPAFHQILIFVTVQFLMIPKVPVIDRFHVSRIGPPDVPLFRCI VRYGYKDIRDSFEFETQLIEKITVFLKCELNCKEILILEQSVLGAKAQRRKELRLQYLQEASEDVNELMEAKEAGVTFMMGHTCVIAREASCILKKLVIN YVYGFLRRNSRCPATSFGIPHSALIEVGMVYRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.007G068200 [exp]	0	1
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.002G227800 [exp]	1.41	0.9912
AT4G31980			unknown protein		Potri.003G209832 [exp]	2.44	0.9910
AT2G37460			nodulin MtN21 /EamA-like trans...		Potri.006G082700 [exp]	3.46	0.9772
					Potri.003G151850 [exp]	9.21	0.9760
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	10.00	0.9815
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056600 [exp]	13.85	0.9808
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	14.38	0.9792
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	16.00	0.9717
					Potri.010G076350 [exp]	17.32	0.9550
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	17.94	0.9685

Compare expression of checked genes

Potri.007G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.