Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39390 521 / 0 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT4G09810 504 / 0 Nucleotide-sugar transporter family protein (.1) AT1G34020 499 / 3e-179 Nucleotide-sugar transporter family protein (.1) AT1G21070 275 / 7e-91 Nucleotide-sugar transporter family protein (.1) AT1G76670 270 / 9e-89 Nucleotide-sugar transporter family protein (.1) AT5G42420 268 / 5e-88 Nucleotide-sugar transporter family protein (.1.2) AT2G30460 181 / 3e-54 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 177 / 6e-53 Nucleotide/sugar transporter family protein (.1) AT1G06890 177 / 8e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT5G55950 96 / 4e-22 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086700 [exp] 582 / 0 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G064700 [exp] 528 / 0 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 520 / 0 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 270 / 1e-88 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 269 / 2e-88 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.019G128900 [exp] 182 / 2e-54 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 176 / 3e-52 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.004G211900 [exp] 176 / 3e-52 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 167 / 9e-49 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005790 [exp] 535 / 0 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 532 / 0 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 502 / 2e-180 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 487 / 1e-173 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 275 / 1e-90 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 273 / 7e-90 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10021464 [exp] 176 / 3e-52 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 169 / 1e-49 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 169 / 1e-48 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 155 / 7e-45 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.007G077900.1 pacid=42765926 polypeptide=Potri.007G077900.1.p locus=Potri.007G077900 ID=Potri.007G077900.1.v4.1 annot-version=v4.1 ATGTCTTCAACAAAGGCTGACAGGAAGGCAGCTGGTGATGCAGCTTCATGGCTGTTCAATGTTGTCACATCTGTTGGAATCATCCTCGTCAATAAAGCCT TGATGGCTACCTACGGTTATAGTTTTGCTACAACATTAACGGGTCTGCATTTTGCCACAACAACATTGTTAACTGTTGTCCTTAGGTGGCTGGGTTATAT CCAGCCTTCCCATCTACCACTGCCTGATCTTCTGAAGTTTGTTTTGTTTGCAAACTGTTCTATTGTTGGAATGAATGTGAGTTTGATGTGGAACTCGGTT GGATTTTATCAGATTGCGAAGCTGAGTATGATCCCAGTATCTTGTTTTCTGGAAGTTGTCTTGGACAGCGTGCGGTATTCAAGGGACACAAAGCTTAGTA TACTAGTAGTTCTTCTTGGTGTGGCAGTATGTACTGTTACAGATGTGAGTGTTAATGCCAAGGGATTTGTAGCTGCTGTAATAGCAGTTTGGAGCACTGC CTTGCAACAGTATTATGTACATTATCTTCAACGGAGGTATTCTCTAGGATCTTTCAACTTATTGGGGCACACTGCTCCAGCACAAGCTGCATCTCTGCTG GTAGTAGGGCCCTTTTTGGACTATTGGTTGACAAACAATAGAGTTGATGCTTATGCCTACACTTTCATATCCACTTTGTTCATAGTCGTGTCGTGCAGCA TTGCAGTAGGGACAAACCTCAGCCAATTCATCTGCATTGGCAGGTTTACAGCCGTGTCATTCCAAGTGCTTGGACATATGAAGACAATTCTTGTCCTGAT TTTAGGATTTATTTTCTTCGGGAAAGAGGGTCTCAATCTTCATGTAGTTGTAGGCATGATCATTGCAGTAGCAGGAATGATCTGGTATGGAAACGCCTCA TCTAAGCCCGGAGGGAAGGAGCGCCGTAGTCTTTCAATGAATGGCAACAAATCACAAAAACATGATGGGTTACCAGAATCCACCGAGGTGGATGATAAGG TTTAG
AA sequence Show only first row Show all	>Potri.007G077900.1 pacid=42765926 polypeptide=Potri.007G077900.1.p locus=Potri.007G077900 ID=Potri.007G077900.1.v4.1 annot-version=v4.1 MSSTKADRKAAGDAASWLFNVVTSVGIILVNKALMATYGYSFATTLTGLHFATTTLLTVVLRWLGYIQPSHLPLPDLLKFVLFANCSIVGMNVSLMWNSV GFYQIAKLSMIPVSCFLEVVLDSVRYSRDTKLSILVVLLGVAVCTVTDVSVNAKGFVAAVIAVWSTALQQYYVHYLQRRYSLGSFNLLGHTAPAQAASLL VVGPFLDYWLTNNRVDAYAYTFISTLFIVVSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLILGFIFFGKEGLNLHVVVGMIIAVAGMIWYGNAS SKPGGKERRSLSMNGNKSQKHDGLPESTEVDDKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.007G077900 [exp]	0	1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	5.47	0.7702	Pt-RER1.5
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	9.59	0.7224
AT3G13930			Dihydrolipoamide acetyltransfe...		Potri.003G043900 [exp]	16.24	0.8025
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	18.02	0.7351
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	23.66	0.6981
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	25.07	0.7098	Pt-UBC.4
AT4G12590			Protein of unknown function DU...		Potri.006G011500 [exp]	34.00	0.7606
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	37.76	0.6921	RAB1.6
AT2G23070			Protein kinase superfamily pro...		Potri.007G054100 [exp]	38.49	0.6960
AT4G16444			unknown protein		Potri.005G101300 [exp]	39.72	0.7509

Compare expression of checked genes

Potri.007G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.