Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10180 838 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 738 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT4G08620 610 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 588 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 570 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G51895 551 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT3G15990 492 / 8e-167 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 476 / 5e-161 SULTR3;3, AST91 sulfate transporter 91 (.1) AT4G02700 475 / 3e-160 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 448 / 5e-150 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079000 [exp] 1068 / 0 AT5G10180 828 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.002G092400 [exp] 835 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.005G167300 [exp] 623 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 614 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 540 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 532 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 508 / 3e-173 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 508 / 5e-173 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 486 / 1e-164 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016806 [exp] 867 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10022502 [exp] 780 / 0 AT5G10180 798 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10029616 [exp] 601 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10041111 [exp] 599 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 595 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 535 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 528 / 1e-179 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 471 / 6e-158 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035897 [exp] 463 / 5e-155 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 462 / 1e-154 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.007G088700.1 pacid=42765045 polypeptide=Potri.007G088700.1.p locus=Potri.007G088700 ID=Potri.007G088700.1.v4.1 annot-version=v4.1 ATGGCTTCTCTGGCAATTGAAACAGGTCATCAAGAAATCCATGACCTTGAGAGGAATGGGCATGCTGAAAAGGCTCAGTGGGTGCTCAATGCTCCTGAGC CACCTAGCCTGTGGCAAGAGCTCACGGGTTCCGTCAGGGAAACAGTTTTGCCTCATGCCAGGAGATTCCCAACTGTCAAGGACAAGGGTAGCCTTTCCAA GACTGTAATTTCATTCCTGCACGCAATTTTTCCCATATTTTGTTGGTGCCGGAACTACAAGGCAACAAATTTCAAGAACGATCTGTTGGCGGGTCTAACT CTCGCTAGTCTCTGCATTCCTCAGAGTATTGGATATGCAACTCTAGCAAAGCTTGATCCTCAATATGGCCTCTATACAAGTGTTATCCCGCCTCTCATTT ATGCTGTAATGGGAACTTCAAGAGACATAGCAATTGGGCCAGTGGCTGTGGTTTCACTGCTCTTGTCTTCGATGATTCCGAAACTAGAAGATCCTGAGGC TAATCCAATTCTCTACAGAAATCTTGTTCTTACAACAACCTTTTTTGCAGGAATTTTCCAAGCAGCATTTGGACTATTCAGGTTGGGTTTCCTTGTGGAT TTTCTCTCCCATGCTGCAATTGTTGGGTTTGTAGCAGGGGCAGCCATTGTCATCGGTCTTCAACAAATGAAAGGGCTACTTGGGATTACTCATTTCACAA ATAAGACTGATGTTATCTCTGTAATGGAAGCTATTTGGAGAGCAGTTCATCATTCTTGGAATCCCCATAATTTTATACTCGGATGCTCATTCTTAACTTT TATTCTAATAACCAGATTTGTGGGTAGAAGGAACAGGAAGCTCTTCTGGCTGCCAGCAATTGCTCCTTTGATATCAGTTGTTTTATCAACTCTTCTAGTT TACCTGACAAGAGCAGATAAACATGGGGTAATGATTATAAAACACATTAAAAGGGGCTTAAACCCAAGCTCAGTCCATCAGTTACAGTTCAATAACCCAC ACATCGGAGAAGTGGCTAAAATTGGGCTTATAGTCGCTGTCGTCGCACTCACTGAAGCAATTGCAGTAGGCAGGTCTTTTGCATCCATAAAAGGATACCA CATCAATGGAAACCAAGAAATGGTTGCCATGGGATTTATGAACATTTTGGGATCTTTCACTTCTTGCTATGTTGCAACTGGTTCGTTCTCGCGCAGTGCT GTCAATTTTAGTGCTGGTTGTGAAACTGCTATGTCAAATATTGTGATGGCCATTACAGTGATCATATCCTTGGAATTGTTCACAAGGCTATTGTATTACA CTCCCATTGCAATCCTTGCTGCAATCATTCTTTCTGCTTTACCTGGACTCGTTGACCTTCATGAAGCATACAATATCTGGAAAATTGATAAGCTGGATTT CCTTGCTTGCGCTGGGGCCTTCATTGGGGTCTTATTTGCTTCCGTGGAGATTGGTCTACTAGCTGCGGTGACAATATCTTTTGTGAAGATTATTATAATC TCAATTAGACCAGGCGCGGAAGTACTTGGAAGACTCCCTGAAACTGATATATTCTGTGATGTTGATCAATACCCTATGGCTGCTAAGAATCCTCAGGTCC TCATAATCCGTGTTAAGTCTGGTTTGCTTTGTTTTGCAAATGCAAACTTTGTCAAAGAAAAGATAATGAAATTGGCAACTGAAGAGGAAGAGGGCAGTAA AGGGAAAAGGACTATTCAAGTTGTGATTCTTGACATGTCCAATTTAATGAACATTGATGTATCTGGAATCACTTCTTTGGTGGAATTGCACAAGAATCTT GCCTCGAGTGGAATGGAGCTAGCCATAACAAACCCTAAGTGGCAAGTGATTCATAAGCTAAGGGTAGCCAACGTTGTGACCAAAATAGGAGGAAGGGTCT TCTTGACAATCGGAGAAGCTGTGGATGCATGTCTGGGCGCCAAAATGGCTGCTGTTTAA
AA sequence Show only first row Show all	>Potri.007G088700.1 pacid=42765045 polypeptide=Potri.007G088700.1.p locus=Potri.007G088700 ID=Potri.007G088700.1.v4.1 annot-version=v4.1 MASLAIETGHQEIHDLERNGHAEKAQWVLNAPEPPSLWQELTGSVRETVLPHARRFPTVKDKGSLSKTVISFLHAIFPIFCWCRNYKATNFKNDLLAGLT LASLCIPQSIGYATLAKLDPQYGLYTSVIPPLIYAVMGTSRDIAIGPVAVVSLLLSSMIPKLEDPEANPILYRNLVLTTTFFAGIFQAAFGLFRLGFLVD FLSHAAIVGFVAGAAIVIGLQQMKGLLGITHFTNKTDVISVMEAIWRAVHHSWNPHNFILGCSFLTFILITRFVGRRNRKLFWLPAIAPLISVVLSTLLV YLTRADKHGVMIIKHIKRGLNPSSVHQLQFNNPHIGEVAKIGLIVAVVALTEAIAVGRSFASIKGYHINGNQEMVAMGFMNILGSFTSCYVATGSFSRSA VNFSAGCETAMSNIVMAITVIISLELFTRLLYYTPIAILAAIILSALPGLVDLHEAYNIWKIDKLDFLACAGAFIGVLFASVEIGLLAAVTISFVKIIII SIRPGAEVLGRLPETDIFCDVDQYPMAAKNPQVLIIRVKSGLLCFANANFVKEKIMKLATEEEEGSKGKRTIQVVILDMSNLMNIDVSGITSLVELHKNL ASSGMELAITNPKWQVIHKLRVANVVTKIGGRVFLTIGEAVDACLGAKMAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.007G088700 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G267900 [exp]	4.00	0.8027
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Potri.001G098800 [exp]	5.74	0.8280
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235600 [exp]	6.16	0.7791
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	7.21	0.8326
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	8.24	0.8339
					Potri.016G139750 [exp]	9.48	0.7536
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Potri.003G061700 [exp]	11.22	0.7562
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	12.48	0.8182	DCL905
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.005G068801 [exp]	16.97	0.7175
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107200 [exp]	20.07	0.7933

Compare expression of checked genes

Potri.007G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.