Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 397 / 1e-133 BAT1 bidirectional amino acid transporter 1 (.1.2) AT2G34960 50 / 4e-06 CAT5 cationic amino acid transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078100 [exp] 836 / 0 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 617 / 0 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 534 / 0 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2) Potri.010G119100 [exp] 458 / 2e-157 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.008G125100 [exp] 444 / 2e-151 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039616 [exp] 960 / 0 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10028561 [exp] 823 / 0 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10034628 [exp] 434 / 2e-145 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10035260 [exp] 358 / 4e-119 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 249 / 2e-77 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.007G100700.2 pacid=42766801 polypeptide=Potri.007G100700.2.p locus=Potri.007G100700 ID=Potri.007G100700.2.v4.1 annot-version=v4.1 ATGGGATTTAGACGACCAGAGGCAGCACAAGTCCAAGAAATGGATCCCGGGGAGAAGCGACTCAATGAACTGGGATACAAGCAAGAGCTCAGAAGAGAAA TGACTTTGTTCAAAACTCTTGCAATATCATTTTCAACAATGACCCTTTTCACAGGGATTACTCCCCTGTATGGTTCAAGCCTTCTATATGCAGGTCCTGC AAGTCTTGTCTGGGGATGGGTGGTTGTATCTTTCTTCACCTGGTTTGTTGGCATTGCAATGGCTGAGATCTGTTCCTCTTTTCCAACAACCGGGTCTCTC TATTTTTGGGCAGCTCATTTAGCAGGTCCCAGATGGGGACCGTTTGCATCATGGTGTTGTGCTTGGCTTGAGACCATAGGGCTAGTCGCAGGCATCGGTA CACAGGCATATGCAGGTTCACAAACTTTGCAGAGTATCATCTTATTGTGCACCGGAACAAATAAAGATGGAGGATATTTTGCACCTAAATGGTTGTTCTT ATGCATGTACATAGGCCTCACATTGATATGGGCAGTGCTCAACACATTTGCATTGGAAGTAATAGCCTTCATTGATGTAATTTCAATATGGTGGCAGGTT ATTGGAGGGTTGGTTATAGTTATAATGCTTCCTCTGGTGTCGCTTACTACACAATCTGCTTCATATGTATTCACTCATTTTGAAACCGCGCCTGACTCGA CAGGAATATCAAGCAAACCTTACGTAGTCGTTCTATCTTTCCTTGTCAGTCAGTATTCCTTGTATGGATATGATGCAGCAGCCCATCTTACAGAGGAAAC TAAAGGTGCAGATAAAAATGGTCCTATTGCAATTCTTTCTAGCATTGGGATCATTACGGTATTTGGCTGGGCTTATATCCTAGCCCTTACTTTCAGTATT CAGGATTTTGGCTACCTATACGATCCAAGCAATGAGACTGCAGGTGCATTTGTGCCAGCTCAAATACTCTATGATGCATTCCAAGGAAGATATCATAATT CTGCTGGAGCAATCGTTTTACTGTTCATCATATGGGGGTCATTTTTCTTCGGTGGGCTCTCAATCACCACCAGTGCAGCTAGAGTGGTGTATGCTTTATC AAGAGATGAAGGAATTCCCTTTTCATCCATCTGGCGAAAAATCCACCCAAAGCATAAGGTTCCCTCAAATGCAGTGTGGCTATGTGCAGCCATCTGCATT CTTCTTGGACTCCCGATCTTGAAAGTCAATGTAGTCTTCACTGCCATAACTTCCATATGTACAATTGGATGGGTTGGAGGCTATGCAGTTCCAATCTTTG CAAGAATTGTAATGGACGAGAAGAATTTCAAAGCTGGGCCGTTTTACCTAGGCAGAGCAAGGAGGCCAGTTTGCATCATTGCCTTTCTGTGGATTTGTTA TACCTGTTCAGTCTTTCTTCTGCCAACTTATTACCCCCTTTCCTGGAATACTTTCAACTATGCGCCGGTGGCTATAGGTGTTGGTTTGAGTTCGATAATG CTCTGGTGGATGCTGGATGCAAGGAAATGGTTCAAGGGACCTGTTAGAAATATTGATATTTCAAATGGGAAGGTTTAA
AA sequence Show only first row Show all	>Potri.007G100700.2 pacid=42766801 polypeptide=Potri.007G100700.2.p locus=Potri.007G100700 ID=Potri.007G100700.2.v4.1 annot-version=v4.1 MGFRRPEAAQVQEMDPGEKRLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLLYAGPASLVWGWVVVSFFTWFVGIAMAEICSSFPTTGSL YFWAAHLAGPRWGPFASWCCAWLETIGLVAGIGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTLIWAVLNTFALEVIAFIDVISIWWQV IGGLVIVIMLPLVSLTTQSASYVFTHFETAPDSTGISSKPYVVVLSFLVSQYSLYGYDAAAHLTEETKGADKNGPIAILSSIGIITVFGWAYILALTFSI QDFGYLYDPSNETAGAFVPAQILYDAFQGRYHNSAGAIVLLFIIWGSFFFGGLSITTSAARVVYALSRDEGIPFSSIWRKIHPKHKVPSNAVWLCAAICI LLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARIVMDEKNFKAGPFYLGRARRPVCIIAFLWICYTCSVFLLPTYYPLSWNTFNYAPVAIGVGLSSIM LWWMLDARKWFKGPVRNIDISNGKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	1.00	0.9844
AT4G14746			unknown protein		Potri.005G051900 [exp]	2.82	0.9826
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	3.00	0.9790
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	4.47	0.9772
AT3G05858			unknown protein		Potri.010G003900 [exp]	5.83	0.9550
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	7.41	0.9625
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	7.48	0.9656
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.014G028500 [exp]	7.93	0.9668
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	8.12	0.9514
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	8.12	0.9671

Compare expression of checked genes

Potri.007G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.