Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13650 513 / 0 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 429 / 7e-150 GONST2 golgi nucleotide sugar transporter 2 (.1) AT1G21870 72 / 1e-13 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 72 / 1e-13 EamA-like transporter family protein (.1) AT4G32272 70 / 6e-13 Nucleotide/sugar transporter family protein (.1.2) AT5G19980 68 / 2e-12 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 65 / 3e-11 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 58 / 4e-09 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G28315 44 / 0.0001 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062900 [exp] 723 / 0 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 433 / 2e-151 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 86 / 1e-18 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G071700 [exp] 76 / 5e-15 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.002G084500 [exp] 73 / 4e-14 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 70 / 5e-13 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.018G026600 [exp] 70 / 6e-13 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 65 / 2e-11 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.008G177700 [exp] 64 / 5e-11 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024126 [exp] 603 / 0 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 473 / 3e-167 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 424 / 5e-148 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 386 / 2e-132 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10033058 [exp] 79 / 4e-16 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 77 / 2e-15 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10038090 [exp] 76 / 3e-15 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10017141 [exp] 73 / 5e-14 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10042700 [exp] 72 / 1e-13 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10018311 [exp] 71 / 2e-13 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.007G106400.1 pacid=42765382 polypeptide=Potri.007G106400.1.p locus=Potri.007G106400 ID=Potri.007G106400.1.v4.1 annot-version=v4.1 ATGGGTACAAGGTTAATTTCTTTGGATTCTCCTGATTCTCTTTATGAAAGGAGTCTGATAGATGATACAGATAAGGTTAACCAAAGTGAGGAAAGAGTCC TGAAACTTCACGAGTTGAACGGAGTGGTAGACCGGTCCTCAAGTCCTTTAAAAAGAGAAGTAGTTAACAGGTTATCTTATTCTTTCTCAATGAAGTCTCT TGAGAATGATGAAATTGATTTGGAAGATGGCAAGTTGGAAAAGGATAAAGATAGACCAATACGTAGTAAAGGTGTAGTTAGAATACAGAATGAAGCCTTA TTATCTGGCTTTGCATATTGCATTTCCTCCTGCAGCATGATACTGGTCAACAAATATGTGCTTTCCAGCTATGATTTTAATGCTGGGATATCTTTGATGC TTTACCAGAATTTCATCTCGGTGATTATTGTGTCAACGTTGAGTTTGCTGGGTGTAATATCAACAGAACCACTCACTTGGAGATTGATTAAGGTCTGGTT ACCTGTGAATTTTATATTTGTCGGGATGCTTGTTACAAGCATGTTTAGTTTGAAATACATCAATGTTGCCATGGTCACAATCCTGAAGAATGTTACTAAT GTCATAACTGCGGTTGGTGAAATGTATTTATTCCAGAAGGACCATGACAGTAGAGTATGGGCTGCTCTGTTTTTAATGATTATTTCGGCCATTTCTGGTG GGATTACTGATCTTTCTTTCCATGCTGTTGGCTATGCATGGCAGATCATAAACTGTTTCCTAACAGCATCTTATTCGTTGACTCTACGCAGGGTCATGGA TACAGCTAAGCATGTCACGAAATCTGGAAACTTGAATGAGTTTTCAATGGTTATGCTAAACAATACTCTTTCTTTGCCTCTGGGGCTTATTCTTATTTTT GTTTTCAATGAAGTTGACTATCTGTCCAGAACACCACTTTTGAGGTTGCCTACCTTTTGGTTTGTTGTGACTCTTAGTGGATTTTTGGGTCTGGCAATCA GCTTCACTTCTATGTGGTTTCTTCATCAAACAGGGGCTACCACATACAGTCTTGTGGGATCGCTGAACAAGATTCCCCTGTCTGTTGCTGGCATCTTCTT GTTCCACGTGCCCACCAGTTTGCAAAACTCAGCAAGCATTTTATTTGGTCTTCTGGCAGGAGTATTTTTTGCTAGAGCCAAAATGCGCGAGAGATCTCAG AGCTGA
AA sequence Show only first row Show all	>Potri.007G106400.1 pacid=42765382 polypeptide=Potri.007G106400.1.p locus=Potri.007G106400 ID=Potri.007G106400.1.v4.1 annot-version=v4.1 MGTRLISLDSPDSLYERSLIDDTDKVNQSEERVLKLHELNGVVDRSSSPLKREVVNRLSYSFSMKSLENDEIDLEDGKLEKDKDRPIRSKGVVRIQNEAL LSGFAYCISSCSMILVNKYVLSSYDFNAGISLMLYQNFISVIIVSTLSLLGVISTEPLTWRLIKVWLPVNFIFVGMLVTSMFSLKYINVAMVTILKNVTN VITAVGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKHVTKSGNLNEFSMVMLNNTLSLPLGLILIF VFNEVDYLSRTPLLRLPTFWFVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGIFLFHVPTSLQNSASILFGLLAGVFFARAKMRERSQ S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.007G106400 [exp]	0	1
AT3G13480			unknown protein		Potri.003G221800 [exp]	4.69	0.8082
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	6.16	0.8378
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	7.14	0.8326
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.014G136200 [exp]	7.21	0.8501	Pt-HPT2.1
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Potri.019G063700 [exp]	7.34	0.7743
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	11.48	0.8260
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	14.49	0.8089
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Potri.011G130533 [exp]	26.58	0.7338
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	29.22	0.8107
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.008G068800 [exp]	29.44	0.7580

Compare expression of checked genes

Potri.007G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.