Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 369 / 5e-125 GRAS GRAS family transcription factor (.1) AT4G37650 194 / 5e-56 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT5G48150 173 / 2e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 161 / 7e-45 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 164 / 2e-44 GRAS SCL5 scarecrow-like 5 (.1) AT5G67411 143 / 2e-40 GRAS GRAS family transcription factor (.1) AT1G21450 152 / 3e-40 GRAS SCL1 SCARECROW-like 1 (.1) AT5G17490 150 / 5e-40 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 147 / 2e-38 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 145 / 3e-38 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041500 [exp] 830 / 0 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.005G145600 [exp] 385 / 6e-131 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G053500 [exp] 376 / 4e-127 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.017G019900 [exp] 198 / 1e-58 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 199 / 3e-58 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 190 / 1e-55 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 171 / 4e-47 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G409500 [exp] 170 / 8e-47 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.014G164400 [exp] 166 / 1e-45 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039709 [exp] 620 / 0 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10018498 [exp] 601 / 0 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10014852 [exp] 372 / 1e-125 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 362 / 9e-122 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10012323 [exp] 181 / 4e-51 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10025200 [exp] 177 / 2e-50 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 172 / 3e-48 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 170 / 3e-47 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10006369 [exp] 166 / 5e-46 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10011542 [exp] 166 / 4e-45 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.007G119000.1 pacid=42765316 polypeptide=Potri.007G119000.1.p locus=Potri.007G119000 ID=Potri.007G119000.1.v4.1 annot-version=v4.1 ATGAAAACTGAACTGAGAGGAAACAGTAATACCTCCATTTCTCTACAAAATCCTAGTCTCTTCAACAACCCTCAAAGCTCTCTCTCCGGTGCACTTAATG GGTGTCTTGGTAGCCTTGATGGAGCCTGTATAGAGAAGCTTCTACTTCATTGTGCTAGTGCCTTAGAACACAATGATGGGACTTTGGCTCAACAAGTGAT GTGGGTGCTCAACAATGTTGCTTCTTTGGTTGGTGACCCTAACCAAAGGCTCACTTCTTGGTTTCTTAGGGCACTTATCTCCAGGGCATCCAAGGTTTGT CCTACCGCGATGAATTTTGATGGTAGCAGCACAATTCGGAGGAGGAACATGTCTGTCACCGAGCTTGCCGTGTACGTTGATCTTATCCCTTGGCACAGGT TTGGATTTTGTGCATCAAACAGTGCTATTTTGAAGGCAATTGAAGGTTACTCTAAAGTTCATATCTTAGATTTTAGCATCACTCATTGTATGCAGTGGCC TACTCTTATAGATGCTTTAGCTATAAGGCCTGAAGGTCCTCCTTCACTTAGGATTACAGTTCCCTCTTGTAGACCACCAGTCCCTCCTTTTCTTAATGTA TCATGTGAAGAAGTTGGTCTCCGTTTGAGCAATTTCGCCAAATATAGGGATGTTCCTTTTGAATTCAATGTGTTTGATCATGACCCATCTTCTTTTGCTT CAAGTGAAATTATGTCCCAAGAATCTTCTCATGACTTTCATTTCGAGTCATTGTTGAATCACTTGACTCCTGCAATGCTAGACCTTAGAGACGATGAGGC CTTGGTGATAAATTGCCAAAACTGGTTAAGATACTTGTCTGATGAGGAAAAGGGAAATAGTGTTCAAGATTCTTCCTTAAGAGACGCTTTCCTTTGTACA GTAAAAGGTTTCAATCCTTGTATTGTAGTTGTTGTCGATGAAGATTCTGATTTAAGTGCACCAAGCCTCTCTTCTAGGATCACTACTTGCTTCAATTTTC TATGGATACCATTCGATGCTTTGGAAACTTTCTTACTTAAAGATAGTAGCCAAAGGATTGAATATGAGTCTGATATTGGTCATAAAATCGAAAATATTAT CAGTTTTGAAGGGGCTCAAAGGATAGAGAGGTTAGAATCTGGGATTAAATTAGCACAAAGGATGAAAAATGCAGGGTTTTCAAGCGTTCCATTCTGTGAA GACACAATTGGTGAAGTTAGATCCTTGCTAGAAGAGCATGCTGGTGGGTGGGGCATGAAAAGAGAAGAAGATCATATGCTGGTGCTCACATGGAAGGGCC ACAACTCAGTTTTTTCCACAGCTTGGGTTCCAAATGGTTTACAGGAATAA
AA sequence Show only first row Show all	>Potri.007G119000.1 pacid=42765316 polypeptide=Potri.007G119000.1.p locus=Potri.007G119000 ID=Potri.007G119000.1.v4.1 annot-version=v4.1 MKTELRGNSNTSISLQNPSLFNNPQSSLSGALNGCLGSLDGACIEKLLLHCASALEHNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALISRASKVC PTAMNFDGSSTIRRRNMSVTELAVYVDLIPWHRFGFCASNSAILKAIEGYSKVHILDFSITHCMQWPTLIDALAIRPEGPPSLRITVPSCRPPVPPFLNV SCEEVGLRLSNFAKYRDVPFEFNVFDHDPSSFASSEIMSQESSHDFHFESLLNHLTPAMLDLRDDEALVINCQNWLRYLSDEEKGNSVQDSSLRDAFLCT VKGFNPCIVVVVDEDSDLSAPSLSSRITTCFNFLWIPFDALETFLLKDSSQRIEYESDIGHKIENIISFEGAQRIERLESGIKLAQRMKNAGFSSVPFCE DTIGEVRSLLEEHAGGWGMKREEDHMLVLTWKGHNSVFSTAWVPNGLQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G119000 [exp]	0	1
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020400 [exp]	2.64	0.9252
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.015G139900 [exp]	3.31	0.9199
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	3.74	0.9504
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	3.87	0.9284
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	4.24	0.9484	DFL2.1,GH3-11
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Potri.006G195100 [exp]	4.89	0.9356
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	10.19	0.9246
AT2G44930			Plant protein of unknown funct...		Potri.012G012202 [exp]	10.81	0.9219
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	14.69	0.9194
AT4G14480			Protein kinase superfamily pro...		Potri.008G163800 [exp]	17.49	0.9139

Compare expression of checked genes

Potri.007G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.