Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UCC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 119 / 2e-32 UCC1 uclacyanin 1 (.1) AT1G72230 91 / 3e-22 Cupredoxin superfamily protein (.1) AT5G07475 90 / 4e-22 Cupredoxin superfamily protein (.1) AT3G60270 90 / 5e-22 Cupredoxin superfamily protein (.1) AT3G27200 87 / 5e-21 Cupredoxin superfamily protein (.1) AT2G31050 85 / 4e-20 Cupredoxin superfamily protein (.1) AT2G26720 85 / 8e-20 Cupredoxin superfamily protein (.1) AT2G44790 81 / 1e-18 UCC2 uclacyanin 2 (.1) AT1G22480 76 / 5e-17 Cupredoxin superfamily protein (.1) AT4G30590 76 / 7e-17 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080700 [exp] 106 / 3e-28 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 105 / 6e-28 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 95 / 7e-24 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 86 / 1e-20 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 86 / 2e-20 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 86 / 3e-20 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 83 / 5e-19 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 82 / 5e-19 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 81 / 7e-19 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027143 [exp] 156 / 3e-47 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10012085 [exp] 95 / 7e-24 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 94 / 2e-23 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 94 / 3e-23 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 93 / 4e-23 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 90 / 6e-22 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 87 / 5e-21 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 87 / 1e-20 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10006657 [exp] 89 / 2e-20 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10002615 [exp] 82 / 2e-19 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G120200.1 pacid=42765617 polypeptide=Potri.007G120200.1.p locus=Potri.007G120200 ID=Potri.007G120200.1.v4.1 annot-version=v4.1 ATGGTGAGAACATTCACCAGCTTGGCCCTTATGGCCATGATGCTAAGATTGGCCATGGCTGCTAATTATACTGTTGGTGGTCCAAATGGTGGATGGGATG CAACCACAAACCTGCAAGCTTGGGCAGCATCAAATCAATTCTTAGTTGGAGATAACCTCATCTTCCAGTATGGACTCGTGCATGATGTGAATGAAGTTTC AAAGGCAGACTATGACTCCTGCCAGATAACTAGCCCACTAAAGTCATATAGTGGTGGCACAACAGTCATCCCTCTTTCTTCTCCTGGCAAGAGATACTTC ACCTGTGCAACACCAGGACATTGTGCCGGAGGTATGAAGCTTGAAATAGACTCTCTTGCAACTTCTACCCCACCACCGGCCTCTCCCTTAACCCCGCCAC CAGCCTCTCCCTTAACCCCACCGCCAGCTTCACCAAGCCTTCCATCACCTCCAACTACTTCGACTCTACCACCTGCTTCCACCGACATTCCTCCCGCTTC CTCTCCAGCTCCAGAAATTTTTAATCTCTCACCATCACAATCACCAGAAATGACTCCAACAATGTCTCCTTCAGCCCCGCGTACCTCACCATTGACCAGT CCTACACCATCTCCTGCAACTGCCCCTTCTATAGATGGTTTTATGAAAACACCTCTCGCGTCATCAGCTAGCAAAGAAAGTTTGCAACGCAGTCTCACAA TGGGAATCAGCCTAGTTATCATGATGATACTTCTAGCTATCTAA
AA sequence Show only first row Show all	>Potri.007G120200.1 pacid=42765617 polypeptide=Potri.007G120200.1.p locus=Potri.007G120200 ID=Potri.007G120200.1.v4.1 annot-version=v4.1 MVRTFTSLALMAMMLRLAMAANYTVGGPNGGWDATTNLQAWAASNQFLVGDNLIFQYGLVHDVNEVSKADYDSCQITSPLKSYSGGTTVIPLSSPGKRYF TCATPGHCAGGMKLEIDSLATSTPPPASPLTPPPASPLTPPPASPSLPSPPTTSTLPPASTDIPPASSPAPEIFNLSPSQSPEMTPTMSPSAPRTSPLTS PTPSPATAPSIDGFMKTPLASSASKESLQRSLTMGISLVIMMILLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.007G120200 [exp]	0	1	Pt-UCC1.1
AT3G47400			Plant invertase/pectin methyle...		Potri.012G126900 [exp]	9.74	0.7912
AT3G05390			unknown protein		Potri.004G083800 [exp]	11.87	0.8748
					Potri.019G016502 [exp]	19.28	0.7668
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.008G049200 [exp]	20.29	0.8541
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.010G211800 [exp]	26.32	0.8486
AT1G71740			unknown protein		Potri.005G198200 [exp]	33.94	0.7909
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	40.90	0.8396	RBE.1
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	43.17	0.8396	LAC110a
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	91.82	0.8160
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	96.49	0.8168

Compare expression of checked genes

Potri.007G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.