Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 410 / 3e-140 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 198 / 4e-59 GRAS GRAS family transcription factor (.1) AT2G04890 175 / 3e-50 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 171 / 3e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 159 / 6e-43 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 155 / 6e-42 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 150 / 3e-40 GRAS SCL13 SCARECROW-like 13 (.1) AT3G54220 150 / 9e-40 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 147 / 3e-39 GRAS RGL2 RGA-like 2 (.1) AT3G13840 144 / 2e-38 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019900 [exp] 721 / 0 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 433 / 2e-149 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G119000 [exp] 181 / 2e-52 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.017G041500 [exp] 181 / 3e-52 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 179 / 1e-50 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 176 / 3e-49 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.007G053500 [exp] 169 / 6e-48 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 167 / 4e-47 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.001G409500 [exp] 166 / 9e-46 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019361 [exp] 516 / 0 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 401 / 8e-138 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 389 / 4e-132 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 387 / 9e-132 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 378 / 1e-126 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10039709 [exp] 172 / 7e-49 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10014852 [exp] 171 / 2e-48 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 168 / 2e-47 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10018498 [exp] 166 / 1e-46 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10035840 [exp] 166 / 1e-45 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.007G132000.1 pacid=42765719 polypeptide=Potri.007G132000.1.p locus=Potri.007G132000 ID=Potri.007G132000.1.v4.1 annot-version=v4.1 ATGCAAAGCAATAGCAGCAACAACAACAACAATCAGCCTCAGACTAGTCATACATCAACAAGCCGTTCTTCGGACTCCGGTGAGGCTTGTGGGGCAGGAA ACAAATGGGCATCAAGGCTTCTTAGTGAGTGTGCAAGAGCAATCTCAGAGAAGGACTCTAGCAAGATCCATAACCTTCTATGGATGTTAAATGAGCTTGC CTCTCCTTATGGAGATTGTGAACAGAAATTGGCATCTCATTTCTTGCAAGCTCTCTTTTGTAAGGCTACCGACTCCGGCCAACGGTGCTTCAAAACCCTA ACAACAGTAGCTGAAAAGAGCCACTCCTTTGATTCAGCTAGGAAATTGATACTAAAATTCCAAGAGGTAAGCCCATGGACTACTTTTGGTCATGTGGCTT CAAACGGTGCAATTTTGGAGGCCTTAGATGGGGCGAGCAAACTTCACATAATTGATATAAGCCATACCCTTTGCACACAATGGCCTACTTTGCTAGAAGC TTTAGCTACAAGAAATGATGAGACGCCGCATTTAAAGCTCACCGTTGTGGTAACTGCTAGCATTGTAAGATCGGTCATGAAAGAAATTGGCCAAAGAATG GAGAAGTTTGCTAGGTTAATGGGAGTGCCCTTTGAGCTTAATGTAATTAGTGGGCTAAACCATTTAGGAGAGCTCACAAAGGACAGGCTAGGAGTTCAAG AAGATGAAGCTGTCGCGATTAATTGCAATGGGGCATTGAGAAGAGTTGGAGTAGAGGAAAGAAATTCTGTGATCCAGATGTTTCAATCACTTAACCCTCG AGTTGTGACAATTGTTGAAGAAGAAGCTGATTTTACTAGCTCAAGATATGACTTTGTCAAGTGCTTTGAAGAGTGCCTTAGGTATTATACACTATATTTT GAGATGCTAGAGGAGAGCTTTGTCCCAACTAGTAATGAGAGATTGATGTTGGAGAGGGAATGTTCAAGGAACATAGTTAGAGTTTTGGCTTGTGATGAAG GAAATGATGGAGGAGAGTGTGAAAGAAGGGAGAGGGGAAGCCAATGGTTTGAAAGGCTAAGGGAGGCATTTTCCCCTGTTGGGTTCAGTGATGATGTTGT CGATGATGTCAAGGCATTGCTTAAGAGATACCGAGCTGGGTGGGCACTAGTGCTACCTCAAGGAGATCATGACTCAGGAATTTACTTAACATGGAAAGAA GAACCTGTGGTATGGGCTTCTGCATGGAAACCCTAG
AA sequence Show only first row Show all	>Potri.007G132000.1 pacid=42765719 polypeptide=Potri.007G132000.1.p locus=Potri.007G132000 ID=Potri.007G132000.1.v4.1 annot-version=v4.1 MQSNSSNNNNNQPQTSHTSTSRSSDSGEACGAGNKWASRLLSECARAISEKDSSKIHNLLWMLNELASPYGDCEQKLASHFLQALFCKATDSGQRCFKTL TTVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALDGASKLHIIDISHTLCTQWPTLLEALATRNDETPHLKLTVVVTASIVRSVMKEIGQRM EKFARLMGVPFELNVISGLNHLGELTKDRLGVQEDEAVAINCNGALRRVGVEERNSVIQMFQSLNPRVVTIVEEEADFTSSRYDFVKCFEECLRYYTLYF EMLEESFVPTSNERLMLERECSRNIVRVLACDEGNDGGECERRERGSQWFERLREAFSPVGFSDDVVDDVKALLKRYRAGWALVLPQGDHDSGIYLTWKE EPVVWASAWKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	2.00	0.9486
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	2.82	0.9474
AT2G14830			Regulator of Vps4 activity in ...		Potri.004G038600 [exp]	3.16	0.9250
AT4G31980			unknown protein		Potri.003G209300 [exp]	7.74	0.9456
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	8.66	0.9177
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.019G079200 [exp]	8.66	0.8725
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	8.83	0.9466
AT4G12690			Plant protein of unknown funct...		Potri.015G084500 [exp]	11.48	0.8791
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	11.48	0.9345
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	11.83	0.9424

Compare expression of checked genes

Potri.007G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.