Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 216 / 2e-64 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 211 / 5e-63 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 189 / 5e-55 GRAS RGL1 RGA-like 1 (.1) AT3G03450 182 / 5e-52 GRAS RGL2 RGA-like 2 (.1) AT5G17490 167 / 1e-46 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT4G17230 101 / 4e-23 GRAS SCL13 SCARECROW-like 13 (.1) AT1G50600 100 / 1e-22 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 87 / 2e-18 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G63100 82 / 1e-16 GRAS GRAS family transcription factor (.1) AT5G41920 80 / 3e-16 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027800 [exp] 314 / 3e-104 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.017G018600 [exp] 316 / 3e-101 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G018801 [exp] 315 / 5e-98 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 262 / 6e-81 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 239 / 4e-73 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 231 / 2e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G148266 [exp] 221 / 2e-65 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 216 / 2e-64 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 213 / 3e-63 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033583 [exp] 204 / 5e-60 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 198 / 1e-57 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 147 / 4e-39 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 130 / 3e-36 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 118 / 6e-29 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10031172 [exp] 117 / 2e-28 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10031748 [exp] 110 / 5e-26 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10037055 [exp] 106 / 5e-25 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 106 / 6e-25 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10022418 [exp] 105 / 7e-25 AT1G50420 592 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.007G133000.1 pacid=42764948 polypeptide=Potri.007G133000.1.p locus=Potri.007G133000 ID=Potri.007G133000.1.v4.1 annot-version=v4.1 ATGGCCACTCTTCTTCTCAACAAACTGTTAGCCTCTGCTAAGGCGATTGAAGATGGTGATCTGAATCTTGCAGAGTCAGTTTTCAAGGAGATTAAATGCC TAAATGATGCGAATACCAGCACAGCAACAAGAAAACTTGTCAGATTCTATGCTGAAGCGCTCATTCGGAGACTCTATAAACTGTATCCTCGAAATCCTAC TCCATTAGCACCTTCCACGGATTCATATTACATCAGGTGCTGGCGATTTCTTCCTTTCGTGTGGTTTGCAGAAAAAAGCAGCCACCATTCCATCCTTGAT GCCGTTGTTGGAAAAAAGAAAGTCCATGTTATCAACTTCTCTAATATGGAATTCAATATGCTGATTCGAGATTTGATGCGTGATCTAGTGAAGCAGGTGG GCAGTGGACTGTCTTTCCAAGTAACAAATATCAGACCTAAACTGTCAAACAATGAAGAGTACCTCCAAGAAATGGATCGCGTACTAGCTGCAGAGGCTAA AACACTTCGCCTGACAGATTTCAAAGTAGACCATGTATTTGCCAATACTGCAGCAGGTATTGTTGAATCCACTCTCAATCTCAAAAGAACAAGCGAGGAC GAGCTGGCGATAGTTGTGAAATGGGAGTTCGAACTTCACAAATTGATCTTAGTGCCCGGTGCACTCGAGAAGGTTTTGTCAAAACTGAAGGAACTCAGAC CAGAAATCATGGTAATTGTGGAACAGGAAGCCAACCATAACAGTCCTGATATCTTGGACCGACTTGCCCAATCATTCCCATACTACTCCAGCGTATTTGA CTCCATAGAGAAAGATACGACCGAACATGATATCGAAAACAAGGTATCGTGGGAGATGGATTTTAGGCGGCAGATCACTAATGTGGTGGCGCGAGAGGAC ATCCAGCATGCTGAGAGACATGAAACACAGGCTTGGTGGCGAGATCAGCTGCGTCGTTCAGGATTTCATCCTGTTCGCCAGTGGTTCAATCATACAAGGG GTTTTCTTTTCAGTGACTTGACTCAATACACTATAGAAGGAAAGAATGGATGTCCCTTACTACGTCGATACACTGTCCCTCTAGTTATCACATCGGCATG GAAACCCAACTTGCTCAGTCTGATGGAGGCTCGGACAACAAGGAGAACGTGGGCAGTCCAGAATCCATGTCGTTAG
AA sequence Show only first row Show all	>Potri.007G133000.1 pacid=42764948 polypeptide=Potri.007G133000.1.p locus=Potri.007G133000 ID=Potri.007G133000.1.v4.1 annot-version=v4.1 MATLLLNKLLASAKAIEDGDLNLAESVFKEIKCLNDANTSTATRKLVRFYAEALIRRLYKLYPRNPTPLAPSTDSYYIRCWRFLPFVWFAEKSSHHSILD AVVGKKKVHVINFSNMEFNMLIRDLMRDLVKQVGSGLSFQVTNIRPKLSNNEEYLQEMDRVLAAEAKTLRLTDFKVDHVFANTAAGIVESTLNLKRTSED ELAIVVKWEFELHKLILVPGALEKVLSKLKELRPEIMVIVEQEANHNSPDILDRLAQSFPYYSSVFDSIEKDTTEHDIENKVSWEMDFRRQITNVVARED IQHAERHETQAWWRDQLRRSGFHPVRQWFNHTRGFLFSDLTQYTIEGKNGCPLLRRYTVPLVITSAWKPNLLSLMEARTTRRTWAVQNPCR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.007G133000 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	2.00	0.9737
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.013G056700 [exp]	7.21	0.9530
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	12.80	0.9647
					Potri.012G138200 [exp]	12.84	0.8854
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	13.22	0.9628
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	14.49	0.9578
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	14.96	0.9623
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	16.61	0.9628
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	16.91	0.9481
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	17.49	0.9613

Compare expression of checked genes

Potri.007G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.