Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20570 256 / 3e-81 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G44190 200 / 6e-60 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT4G18020 120 / 2e-29 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G58080 82 / 1e-16 GARP ARR18 response regulator 18 (.1) AT2G01760 81 / 2e-16 GARP ARR14 response regulator 14 (.1) AT5G59570 78 / 9e-16 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT4G16110 79 / 1e-15 GARP ARR2 response regulator 2 (.1) AT3G10760 78 / 1e-15 GARP Homeodomain-like superfamily protein (.1) AT5G05090 77 / 2e-15 GARP Homeodomain-like superfamily protein (.1) AT3G16857 78 / 3e-15 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015800 [exp] 533 / 0 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.003G087700 [exp] 157 / 2e-42 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.001G146200 [exp] 121 / 8e-30 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.018G021300 [exp] 88 / 2e-18 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 84 / 4e-17 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 82 / 2e-16 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G135500 [exp] 82 / 2e-16 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 82 / 2e-16 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.006G188000 [exp] 80 / 8e-16 AT2G25180 386 / 8e-126 response regulator 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018649 [exp] 267 / 9e-85 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10039883 [exp] 247 / 4e-77 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 200 / 1e-59 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10011044 [exp] 119 / 6e-29 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 111 / 4e-26 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10040109 [exp] 109 / 2e-25 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 99 / 3e-22 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10036303 [exp] 82 / 1e-16 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10041020 [exp] 81 / 4e-16 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 81 / 4e-16 AT2G25180 414 / 3e-137 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G136901.1 pacid=42765452 polypeptide=Potri.007G136901.1.p locus=Potri.007G136901 ID=Potri.007G136901.1.v4.1 annot-version=v4.1 ATGCTAGCTGTATCACCCTTGAGAAACACACCAGCCACCAAGGATGAGAGCCAAGAACAAATGGAGAGTTATTCTACCATTTTCAATGGAGAGTTCCCTG ACTTCTCCGAAGGGAGCTTGCTCGAAAGTATCGATTTCGATGATCTTTTTGTTAGTATTGATGATGAAGATGTGTTACCAAATTTGGAGATGGATCCTGA AATCCTTGCTGAATTCTCTGTTAGTGGTAGCGGAGGTGAGGAATCGGATGTAAACACATCGGTATCAAATGAGAAAGTGGAGGATAGTATTCATAGAAAA GATGAGGAAGATAAGTTTTCAGGTTTGGACTCGAGTTTGAGCACTAGAGGAGAGGAGATAGTGAGTAAGAGAGACGAGTCCGTGGTTGTTAATCCGGTGC CTAACAAAGATGGTGAGAAGGGAAGAAAATCAGCAGCTCATGCCAAGAACAACAATAATCAAGGGAAGAGGAAAGTGAAGGTGGATTGGACACCAGAGCT GCACAGGAGGTTCGTGCAAGCAGTGGAGCAGCTAGGGGTGGATAAGGCAGTGCCTTCGAGGATTTTAGAACTCATGGGAATTGACTGTCTCACTCGCCAT AATATTGCTAGCCATCTTCAAAAATATCGATCACACCGGAAACATTTGCTAGCGCGCGAGGCTGAGGCAGCAAACTGGAGCCAAAGACGGCAAATGTATG GAGCCGCGGCAGCCAGTGGAGGTGGCAAGAGAGACATTAGCGCATGGCATGCACTCACCATGGGGTTCCCTCCCATAACTCACCCCATGCACCACCACTT TAGACCGTTACATGTATGGGGACATCCTTCCATGGGCCAATCCCCAATGCATATGTGGCCTAAACATCTAGCTCATTCACCTTCACCTTCACCGCCTCGG CCGCTGCCGCCACCACCTACATGGCACCCACCACCACCACCACCACCAGATCCTTCGTATTGGCACCACCACCCTCACCAAAGGGTTCCGAATGGACTAA CCCCAGGGACACCTTGCTTTCCACAGCCACTGGCAACTAGATTTCCTGCACCACCTGTCCCCGGCATCCCGCCCCATGCCATGTACAAAGTAGACCCCGG CATCGGCCTCCTAACCGGACAGCCAGGCCCCAGCCCTCTCTTTGACTTTCATCCGTCAAAAGAGAGTGTAGACGCAGTTATTGGAGATGTTTTATCAAAG CCATGGCTGCCACTTCCTCTGGGACTTAAAGCTCCAGCTACTGATAGTGTGCTGGTGGAGCTGCAAAAGCAAGGAGTTCCGAAGATACCACCAACTCGTG CTTGA
AA sequence Show only first row Show all	>Potri.007G136901.1 pacid=42765452 polypeptide=Potri.007G136901.1.p locus=Potri.007G136901 ID=Potri.007G136901.1.v4.1 annot-version=v4.1 MLAVSPLRNTPATKDESQEQMESYSTIFNGEFPDFSEGSLLESIDFDDLFVSIDDEDVLPNLEMDPEILAEFSVSGSGGEESDVNTSVSNEKVEDSIHRK DEEDKFSGLDSSLSTRGEEIVSKRDESVVVNPVPNKDGEKGRKSAAHAKNNNNQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRH NIASHLQKYRSHRKHLLAREAEAANWSQRRQMYGAAAASGGGKRDISAWHALTMGFPPITHPMHHHFRPLHVWGHPSMGQSPMHMWPKHLAHSPSPSPPR PLPPPPTWHPPPPPPPDPSYWHHHPHQRVPNGLTPGTPCFPQPLATRFPAPPVPGIPPHAMYKVDPGIGLLTGQPGPSPLFDFHPSKESVDAVIGDVLSK PWLPLPLGLKAPATDSVLVELQKQGVPKIPPTRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.007G136901 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.015G054600 [exp]	1.41	0.9641
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	4.24	0.9473
					Potri.014G124700 [exp]	4.89	0.9427
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Potri.006G195100 [exp]	5.65	0.9363
					Potri.004G048000 [exp]	11.53	0.9414
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.019G087300 [exp]	20.59	0.9461
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	21.44	0.9334
AT1G79770			Protein of unknown function (D...		Potri.001G188700 [exp]	28.39	0.9130
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142500 [exp]	33.76	0.9051
AT3G47860		CHL	chloroplastic lipocalin (.1)		Potri.001G420800 [exp]	37.22	0.9327

Compare expression of checked genes

Potri.007G136901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.