Plant FIBer expression Database

Potri.007G137101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14470 615 / 0 NB-ARC domain-containing disease resistance protein (.1)
AT3G14460 518 / 4e-160 LRR and NB-ARC domains-containing disease resistance protein (.1)
AT3G50950 220 / 4e-59 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2)
AT3G07040 199 / 3e-52 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
AT1G53350 189 / 7e-49 Disease resistance protein (CC-NBS-LRR class) family (.1)
AT1G58390 184 / 2e-47 Disease resistance protein (CC-NBS-LRR class) family (.1)
AT1G59218 182 / 1e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58848 182 / 1e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58807 182 / 2e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G59620 177 / 4e-45 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G015600
[exp]
1612 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.017G015200
[exp]
1507 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1)
Potri.017G015300
[exp]
1453 / 0 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.017G014900
[exp]
1132 / 0 AT3G14470 571 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.001G029300
[exp]
1057 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.003G055600
[exp]
995 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.T127106
[exp]
936 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200500
[exp]
936 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200200
[exp]
936 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024173
[exp]
930 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039509
[exp]
913 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10007261
[exp]
874 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039540
[exp]
853 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Lus10016316
[exp]
672 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
Lus10005321
[exp]
667 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10026109
[exp]
661 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Lus10026132
[exp]
625 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10005218
[exp]
378 / 3e-111 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Lus10002609
[exp]
347 / 7e-102 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00931 NB-ARC NB-ARC domain
Representative CDS sequence
>Potri.007G137101.1 pacid=42765725 polypeptide=Potri.007G137101.1.p locus=Potri.007G137101 ID=Potri.007G137101.1.v4.1 annot-version=v4.1
ATGGCTCTGGCTTTGATTGGAGAATCACTTCTCTCTGCTGTTATTGAGGTTTTGGTCGAGAAGTTGGCCTATCCTGAGGTTCTGGGATTCTTCAAAACGC
AAAAACTCAATGATGATCTTCTGGAAAGGTTGAAAGAAACACTGAATACTGTCAACGGACTGCTAGACGACGCGGAGGAGAAGCAGATTACAAAGGCTGC
TGTGAAGAACTGGCTTAATGATGTTAAACATGCTGTCTATGAAGCTGAGGACTTGCTGGAGGAGATTGATTATGAACATCTACGATCCAAGGACAAAGCT
GCCTCTCAAATTGTCAGGACTCAGGTCGGGCAGTTCCTTCCATTTCTTAATCCAACTAACAAAAGGATGAAAAGGATAGAAGCAAAGTTAGGAAAGATTT
TTGAGAAGCTTGAACGTTTAATCAAGCACAAGGGTGATCTTCGCCGGATAGAAGGTGATGTTGGAGGTAGACCATTGTCAGAGAAGACAACTCCTCTAGT
TAATGAATCTTATGTTTATGGTAGGGATGCTGACAGGGAAGCCATAATGGAATTGTTGAGACGGAATGAAGAAAATGGCCCGAATGTAGTTGTGATTCCT
ATAGTGGGAATGGGAGGGATTGGAAAAACCACTCTAGCTCAGCTTGTCTACAATGACAGCAGGGTAGACGATTTGTTTGAACTCAAGGTTTGGGTTTGGG
TTTCTGAGATTTTCGATGTAACAAGAGTGATGGATGATATTCTTAAGAAGGTAAATGCAAGTGTTTGTGGCATCAAAGATCCTGATGAATCTCTAAAGGA
GGAATTGGGGGGGAAAATGGTTTTGCTTGTTCTAGATGATGTGTGGAATATTGAGTACAGTGAATGGGACAAATTACTGCTACCTTTGCAGTATGCAGGG
CAAGGAAGTAAGACTGTGGTAACAACACGGAATGAAGATGTGGCGAAAGTCATGCAAACTGTTAACCCCTCTTACTCATTGAAAGGAATAGGCGATGAAG
ATTGCTGGCAGTTGTTTGCAAGGCATGCATTTAGCGGTGTAAATTCTGGTGCACTCCCACACTTGGAAACATTTGGCAGAAAAATAGTGAGAAAGTGCAA
AGGACTACCTCTGGCTGCGAAAACTCTAGGTGGTCTTTTGCACTCTGAAGGAGATGCCAAGGAATGGGAGAGGATATCGAATAGCAACATGTGGGGTTTG
TCAAATGAAAACATCCCTCCGGCTCTAAGATTGAGCTATTATTATCTCCCATCACACCTAAAACGTTGTTTTGCTTACTGTGCAATATTTCCCAAGGGTT
ATACATTTATGAAGAATGAATTAATCACTTTATGGATGGCAGAGGGTTTTTTAGTCCAGTCTAGAGGCGATGTGGAGACTGAAAGAATAGGTGAGAAGTA
CTTTAATGATCTTGTCTCTAGGTCATTTTTCCAGAAATCAAGCGATGATCCGTCAAGCTTCTTCATGCATGAACTCATAATTGATTTAGCCGAATACGTA
TCAGGAGAATTTTGCTTGAAGTTTATGGGAGACGGAGTATCAGGTTCTAGGTTGAATGGTGGAAATCCATGCAGGCTTCCTCAAAGGACTCGTTATTTAT
CACTCACTTCAAGATATGATCAGGTATCCAAGATATTTGAGCACATTCATGAAGTCCAACATCTGCGCAACTTCTTGTTAGTAGCACCTGGGTGGAAAGC
TGATGGCAAGGTATTGCATGACATGTTGAGAATTCTCAAGCGCTTGCGAGTACTATCATTTGTTGGGTCTGGTTATATACATCAGTTTCAGCTACCCAAT
TCCATCGGCAACTTGAAACATCTGCGATATCTAGACCTTTCGGGTAAATCAATAGAAAGGCTGCCTGAAAATATGAGCAAACTGTACAATTTGCAAACAT
TAATCTTGAAGCAGTGTTACTATCTCATCAAGTTGCCAACCAACATGTCCAAACTGGTAAACTTACAACATCTCGATATCGAAGGGACAAAACTGAGAGA
GATGCCACCCAAAATGGGAAAACTCACAAAGCTTCGAAAGTTGACAGATTTCTTTTTGGGAAAACAGAATGGGTCCTGCGTTAAAGAGTTGGGGAAGCTC
TTACATCTTCAAGAGAAGCTTTCTATTTGGAATCTCCAAAATGTTGAGGATGTTCAAGATGCTTTGGAAGCCAATTTGAAGGGTAAGAAGCAGATTGAGA
GGTTGAGGTTGACATGGGATGTAGATATGGATGGCAGAGACGTACTTGAGAAATTGGAGCCTCCTGAAAATGTGAAAGAGCTTGTCATTACTGCTTATGG
GGGTACAAAGTTTCCAGGTTGGGTTGGAAACTCTTCTTTCTCAAATATGGTGTCTTTGGTTCTTGATGGATGCAAGAACTCCACCTCCTTACCACCACTT
GGGCAGTTGCCAAATCTTGAAGAGCTCCAAATTAAAGGATTTGATGAAGTTGTGGCTGTTGGTTCTGAGTTCTATGGAAATGGCCCTTTCATGGAGAAGC
CGTTTAAATCCCTTAAAAGTTTAACATTACTGGGGATGCGAAAATGGAAGGAATGGAATACAGATGCAGCCGGTGCTTTCCCTCATCTTGAAGAGCTTTG
GATAGAAAAATGTCCGGAGTTAACAAATGCCTTGCCTTGCCACCTTCCTTCTCTATTGAAACTTGACATTGAAGAATGTCCACAGCTTGTGGTTTCAATT
CCAGAGGCTCCCAAGCTCACCAGAATCCAGGTCAATGACGGTGAGGGTTCTAATGATCGTATATATATAGAGGAATTATCTAGTTCTAGGTGGTGTCTTA
CCTTTAGAGAAGATTCTCAACTTAAGGGATTGGAGCAAATGAGTTATCTTTCCTCTTCTATAATCATAGACGTTGGCATCTTCGATTGCAGTTCGCTCAA
GTTTTGTCAGCTAGACCTTTTACCCCCGTTATCCACCTTTACAATCCAATATTGTCAAAATCTTGAGTCTCTTTGCATACAAAAGGGACAGCGGGCTCTC
CGTCATTTGAAAATTGCAGAATGTCCTAATTTAGTATCTTTTCTCGAAGGAGGATTGGCTGTCCCAGGTTTGAGAAGGCTTGAGTTAGAGGGTTGCATAA
ATTTGAAGTCGCTGCCAGGAAACATGCATTCCCTCCTTCCTTCCCTCGAGGAATTGGAACTGATCTCACTTCCACAGCTTGATTTCTTTCCAGAAGGGGG
TTTGCCATCTAAGTTAAACTCACTTTGCATCCAAGATTGTATAAAATTGAAGGTGTGTGGTTTGCAATCTCTCACTTCTCTTTCACACTTCCTATTTGTT
GGGAAAGATGACGTGGAGTCCTTCCCTGAGGAGACGCTGCTGCCCTCTACTCTTGTAACCCTTAAAATCCAGGATCTGAGAAATCTGAAATCTTTGGATT
ACAAGGGGCTTAAGCACCTTACCTCTCTTAGCAAGTTGGAGATCTGGAGATGTCCTCAGCTTGAGTCCATGCCAGAAGAGGGGCTGCCCTCCTCCCTCGA
GTACCTTCAACTCTGGAATCTGGCAAATCTGAAATCTCTAGAGTTCAAGGGGCTTCAGCACCTCGCCTCTCTTCGCCAGTTGATGATCAGTGATTGTCCT
AAGCTTGAGTCCATGCCAGAAGAGGGGCTTCCCTCCTCTCTTGAATACCTTAACATCCTGAACCTGACAAATCTGAAATCTCTGGGCTACAAGGGGCTTC
AGCAGCTCTCCTCTCTTCACAAATTGAATTTCTGGAGTTGTCCTAAGCTTGAATCCATGCCAGAACAGGGACTGCCCTCCTCCCTTGAATATCTTGAAAT
TGGAGATTGTCCTTTGCTAGAAAAAAGGTGTCGGAAGGAGATAGGCGAAGATTGGCCCAAGATTTCTCACATCCCCTTTATAAAAATATTCAAGCATTCA
GGAGGATAA
AA sequence
>Potri.007G137101.1 pacid=42765725 polypeptide=Potri.007G137101.1.p locus=Potri.007G137101 ID=Potri.007G137101.1.v4.1 annot-version=v4.1
MALALIGESLLSAVIEVLVEKLAYPEVLGFFKTQKLNDDLLERLKETLNTVNGLLDDAEEKQITKAAVKNWLNDVKHAVYEAEDLLEEIDYEHLRSKDKA
ASQIVRTQVGQFLPFLNPTNKRMKRIEAKLGKIFEKLERLIKHKGDLRRIEGDVGGRPLSEKTTPLVNESYVYGRDADREAIMELLRRNEENGPNVVVIP
IVGMGGIGKTTLAQLVYNDSRVDDLFELKVWVWVSEIFDVTRVMDDILKKVNASVCGIKDPDESLKEELGGKMVLLVLDDVWNIEYSEWDKLLLPLQYAG
QGSKTVVTTRNEDVAKVMQTVNPSYSLKGIGDEDCWQLFARHAFSGVNSGALPHLETFGRKIVRKCKGLPLAAKTLGGLLHSEGDAKEWERISNSNMWGL
SNENIPPALRLSYYYLPSHLKRCFAYCAIFPKGYTFMKNELITLWMAEGFLVQSRGDVETERIGEKYFNDLVSRSFFQKSSDDPSSFFMHELIIDLAEYV
SGEFCLKFMGDGVSGSRLNGGNPCRLPQRTRYLSLTSRYDQVSKIFEHIHEVQHLRNFLLVAPGWKADGKVLHDMLRILKRLRVLSFVGSGYIHQFQLPN
SIGNLKHLRYLDLSGKSIERLPENMSKLYNLQTLILKQCYYLIKLPTNMSKLVNLQHLDIEGTKLREMPPKMGKLTKLRKLTDFFLGKQNGSCVKELGKL
LHLQEKLSIWNLQNVEDVQDALEANLKGKKQIERLRLTWDVDMDGRDVLEKLEPPENVKELVITAYGGTKFPGWVGNSSFSNMVSLVLDGCKNSTSLPPL
GQLPNLEELQIKGFDEVVAVGSEFYGNGPFMEKPFKSLKSLTLLGMRKWKEWNTDAAGAFPHLEELWIEKCPELTNALPCHLPSLLKLDIEECPQLVVSI
PEAPKLTRIQVNDGEGSNDRIYIEELSSSRWCLTFREDSQLKGLEQMSYLSSSIIIDVGIFDCSSLKFCQLDLLPPLSTFTIQYCQNLESLCIQKGQRAL
RHLKIAECPNLVSFLEGGLAVPGLRRLELEGCINLKSLPGNMHSLLPSLEELELISLPQLDFFPEGGLPSKLNSLCIQDCIKLKVCGLQSLTSLSHFLFV
GKDDVESFPEETLLPSTLVTLKIQDLRNLKSLDYKGLKHLTSLSKLEIWRCPQLESMPEEGLPSSLEYLQLWNLANLKSLEFKGLQHLASLRQLMISDCP
KLESMPEEGLPSSLEYLNILNLTNLKSLGYKGLQQLSSLHKLNFWSCPKLESMPEQGLPSSLEYLEIGDCPLLEKRCRKEIGEDWPKISHIPFIKIFKHS
GG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14470 NB-ARC domain-containing disea... Potri.007G137101
[exp]
0 1
AT5G18260 RING/U-box superfamily protein... Potri.013G060900
[exp]
2.82 0.8818
AT5G55600 agenet domain-containing prote... Potri.006G017400
[exp]
2.82 0.8737
AT1G50840 PolIA, POLGAMMA... polymerase I A, polymerase gam... Potri.011G136900
[exp]
6.70 0.8730
AT2G05160 C3HZnF CCCH-type zinc fingerfamily pr... Potri.014G165500
[exp]
6.70 0.8423
AT5G01260 Carbohydrate-binding-like fold... Potri.006G099200
[exp]
7.34 0.8651
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050180
[exp]
8.77 0.8456
AT3G25060 Tetratricopeptide repeat (TPR)... Potri.002G245200
[exp]
12.12 0.8764
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.011G145800
[exp]
12.24 0.8261
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.010G125700
[exp]
13.49 0.8252
AT5G19620 TOC75-V, EMB213... translocon at the outer envelo... Potri.003G204900
[exp]
13.78 0.8489

Potri.007G137101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.