Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 149 / 3e-45 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 120 / 7e-34 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT3G20310 109 / 3e-29 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G28370 107 / 3e-29 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G28360 106 / 7e-29 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G50640 107 / 1e-28 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT1G03800 105 / 1e-27 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT5G51190 99 / 1e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 99 / 1e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G47230 100 / 3e-25 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013700 [exp] 243 / 5e-82 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047600 [exp] 126 / 6e-36 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 106 / 6e-29 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 106 / 9e-29 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.003G150800 [exp] 102 / 4e-26 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.011G057000 [exp] 99 / 2e-25 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 97 / 3e-25 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.001G079800 [exp] 99 / 4e-25 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G067600 [exp] 98 / 6e-25 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039857 [exp] 129 / 2e-37 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 112 / 8e-31 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10018623 [exp] 99 / 3e-26 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 100 / 9e-26 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10014054 [exp] 97 / 2e-24 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10032499 [exp] 97 / 3e-24 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10015415 [exp] 96 / 4e-24 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10042996 [exp] 96 / 6e-24 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 96 / 1e-23 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035129 [exp] 95 / 1e-23 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.007G138100.3 pacid=42766619 polypeptide=Potri.007G138100.3.p locus=Potri.007G138100 ID=Potri.007G138100.3.v4.1 annot-version=v4.1 ATGGCACCCAAGAAGCTTAATGGTAATGACAATGGTTCTTTGAAGAAAGCAAGTGGTGATCATGACAAGAAGGAAATCCATTATAGGGGAGTGAGGAAGA GGCCATGGGGGAGGTATGCTGCTGAGATAAGGGATCCCGGGAAGAAAAGCCGGGTTTGGTTGGGCACGTTTGACACGGCAGTGGAGGCTGCGAGGGCCTA TGATAAGGCGGCGCGTGAGTATCGTGGTGCTAAGGCGAAGACCAACTTTCCAATAGCGGAGAAGGTGGTTGATTATGACGATGAGAAGCAGAGCTCTAGC CAGAGCAGCACCGTTGAGTCGTCAAGCTCCCCGGTGGTTTCTGCGGTGGCGCGTGATGTAACTCGCCAGGTTGGTGGGGTTGTGGGGATGGGGAGGTTTC CCTTTGTGTTCCAGCAGCAGCCGCCGCATGTTAACGCTGTTGGTCCTGTCTGGTTTCTTGATAGTACTGTTAAGCCTGAGTTTGTGGCTCAGCGTTTCCC TGTCCGGTATGACCCGGTGGGTCTTGAGGGCGGGGCCCATAGTGACTCGGATTCATCATCTGTGATTGATTTTAAGCCAAGGAGTTCAATTCTTCATCTT GATCTTAACCTGCCTCCACCAGCTGATGCTTGA
AA sequence Show only first row Show all	>Potri.007G138100.3 pacid=42766619 polypeptide=Potri.007G138100.3.p locus=Potri.007G138100 ID=Potri.007G138100.3.v4.1 annot-version=v4.1 MAPKKLNGNDNGSLKKASGDHDKKEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAVEAARAYDKAAREYRGAKAKTNFPIAEKVVDYDDEKQSSS QSSTVESSSSPVVSAVARDVTRQVGGVVGMGRFPFVFQQQPPHVNAVGPVWFLDSTVKPEFVAQRFPVRYDPVGLEGGAHSDSDSSSVIDFKPRSSILHL DLNLPPPADA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.007G138100 [exp]	0	1
					Potri.018G072101 [exp]	1.41	0.9396
AT1G32928			unknown protein		Potri.001G450000 [exp]	3.16	0.9225
AT1G32928			unknown protein		Potri.001G449900 [exp]	3.46	0.9115
AT4G27280			Calcium-binding EF-hand family...		Potri.001G412077 [exp]	5.65	0.8750
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161600 [exp]	6.63	0.9004
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Potri.010G171000 [exp]	7.34	0.8748
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.001G397200 [exp]	8.94	0.8967
AT4G27280			Calcium-binding EF-hand family...		Potri.011G129100 [exp]	9.16	0.8435
AT4G34320			Protein of unknown function (D...		Potri.009G112430 [exp]	9.16	0.8538
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	9.89	0.8823	DREB47

Compare expression of checked genes

Potri.007G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.