Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 523 / 4e-164 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 441 / 1e-132 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 436 / 2e-130 transmembrane receptors;ATP binding (.1.2) AT5G51630 392 / 1e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G18360 382 / 9e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 385 / 3e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 381 / 8e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 384 / 9e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 381 / 4e-110 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 370 / 2e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G142600 [exp] 1525 / 0 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 1312 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 1200 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 1177 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 1177 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 1176 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 1174 / 0 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 1172 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 1169 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 568 / 3e-180 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 561 / 1e-178 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 563 / 2e-177 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 496 / 8e-154 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 493 / 1e-153 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 474 / 1e-145 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 474 / 7e-145 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 432 / 6e-130 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007813 [exp] 427 / 1e-127 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 426 / 2e-127 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.007G143300.2 pacid=42766197 polypeptide=Potri.007G143300.2.p locus=Potri.007G143300 ID=Potri.007G143300.2.v4.1 annot-version=v4.1 ATGCGGAAAGAAAAACGCAAACAATCCAAAGATGAAGAAAATGATTCATCCTCGCGAAAGAGAAGAAAAGCTGACCTCACTGCCATGACAGAGCCAGATT CTTCTCGATCTAGACCACAATGGGCCTATGATGTCTTTTTGAGTTTTAGAGGAAAAGATACTCGCAAGACATTTACAGATCATCTATATACTGCCTTGGT TCAAGCAGGAATCCACACTTTTCGAGATGATGATGAACTTCCTAGAGGAGAAGAAATCTCCCAACATCTCCTCGAGGCAATTCAAGAATCAAAGATATGT ATAGTGGTCTTCTCAAAAGGATATGCTTCTTCTAGATGGTGTCTTGATGAACTTGTGGAGATTCTGAAGTGCAAATATAGGAAAACTGGTCAGATTGCTC TTCCTATATTCTATGACATTGATCCTTCAGATGTGAGAAAACAGACTGGCAGTTTTGCAGAAGCATTTGTTAAACATGAAGAACGTTCTGAAGAGAAGGT GAAGGAGTGGAGAGAAGCTCTTGAAGAGGCAGGAAATCTATCTGGATGGAATCTCAAAGATATGACAAATGGGCATGAAGCAAAATTTATCCAACATATT ATCAAGGAAGTGTGGAATAAATTGTCTCCCAAGGACATGAATGTTGGTACTCACCCAGTAGGTATTGATCCCCTTGTCAACGAAATCAGAGACTTCGTAA GTAATGGAACAGAGAAGGTTTGCATTGTGGGCATACATGGGATGCCCGGAATAGGAAAGACGACTATAGCAAAAGAAGTATTTGATAAACTCTGCGATGA ATTCGAGGGAAGCTCTTTTCTTTTGAATGTCAAAGAAAAATCAGAATCTAAGGATATGGTTCTTTTACAGAAACAACTTCTTCATGATATTTTAAGACAA AATACTGAGAAGATCAATAATGTTGATAGAGGAAAGGTTCTGATTAAAGAACGACTTCCGCACAAAAGAGTTCTTGTTGTTGTTGACGATGTGGCTCGTC CAGACCAACTACTTGATTTGATGGGAGAGCCAAGTTGGTTAGGCCCTGGAAGTAGGGTAATAATTACAACTAGAGATGAAAGCTTACTTCTTGAAGCTGA TCAAAGATACCAGGTTCAAGAGTTGAACCGGGATAACTCCCTTCAGCTTTTCTGTAGGCATGCGTTTAGGGACACCAAGCCAGCAAAAGATTATGTTGAG CTTTCGAATGATGTAGTTGAATACTGTGGAGGACTTCCTTTAGCTCTTAAGGTTTTAGGTTCTTGTTTGTATGGGAAAAACCAAGCTAGATGGGAATCTG TAATTGACAGATTGAGAAAATTTCCAAACAGTGAAATTCAGAAAAAACTTAGAATAAGTTTTGACACACTGGATGAATCTACACTAAAGAATACATTTCT TGATATTGCATGCTTCTTTATTGGTAGAAAGAAAGAATACGTAGCAAAAGTGCTAGAAGGACGTTATGGTTACAATCCAGAAGATGATTTCGGAACTCTC ATTGAACGGTCTCTGATTAAAGTTGATGATTCTGGAACGATAGGCATGCATGATCTATTACGAGGGATGGGAAGGGAGATCGTTAAGGAAGAGTCACCTG AAAATCCTGCGCAAAGGAGCAGAATTTGGAGTCAAGAGGATGCGTGGATAGTACTCAAGATGCAGATGGGAACAGAAGTTGTAAAGGGCCTTACACTGGA TGTGAGAAGATCAGAAGACAAATCACTAAGCACTGGATCATTTACAAAAATGAAATTGTTAAAATTACTCCAAATCAATGGCGTAGAACTCACCGGGTCT TTCGAACGGCTTTCTAAAGTGTTGACGTGGATTTGTTGGCTTGAATGTCCTTTGGAATTTTTGCCATCCGATTTTACACTAGACTACCTAGTTGTTATTG ATATGCGGTACAGTAACATCAGAGAACTATGGAAGGAAAAAAAGATTCTCAACAAACTAAAGATTCTTGATCTCAGTTATTCAAAAAACCTTGTTAAAAC ACCAAACATGCACAGTTTAAATTTAGAGAAACTACTGCTTGAAGGTTGCTCAAGTTTAGTTGAGATACATCAATGTATTGGACATTCAAAGTCTCTTGTA AGTTTGAATATTTCGGGATGTTCACAACTTCAGAAGCTGCCAGAGTGCATGGGTGATATTGAGTGCTTCACTGAGCTTCTAGCAGATGGAATTAACAACG AGCAATTTCTCTCTTCAGTTGAACATTTGAGGTGCGTGAGGAAGTTGTCATTGCGCGGACACTGGGACTGGAACTGGAACTTACCATATTGGCCTTCACC AAATTCTTCTTGGATTCCAGCTTTTCTGCTAACTCCAACTTCCACTATTTGGAGATTATTGGGAAAGCTAAAACTTGGTTATGGTTTGTCTGAACGGGCA ACTAATTCTGTTGATTTTGGAGGTTTATCCTCTCTCGAAGAATTGGATTTATCAGGAAACAATTTCTTCAGCCTGCCTTCTGGCATTGGCATCCTTTCTA AGCTGCGGCTTTTGACCGTTCAGGAATGCCGAAATCTTGTATCAATCCCAGAGCTCCCCTCAAATTTAGAACATTTGGATGCATTTGGTTGCCAATCAAT GCAATGGGTAAGACTAACAATCCAAGCAAAAAAAAATCTAAATCTGGATCTGTTTTGTTGTCCGGATTTAATAGAGATTCAAGGCATGGAAGGTCTAAGT AATCATGGCTGGATTATTTCCCAAGTTACCAAGAGCAAGTTATCAAATAATTATAAGAAAAGTCTTGTTGAGGCATTGTGCTATGGTGGTTACGGGTATC ATATTCTCTTCAATCATTGTTATACGTTCAGCCACAGAGATAAGTTCACTATGATTCCAAATTGGTTCAGCTACAGTGGAAAAGGAACTTCATTATCATT TCATATACCTCCAGTTTTCCAAGGCTTGGTCGTTGGGGTTGCCTGTCAATGCTTGTTAGGTCATTTTGAAACTGCCAAATTGGGTATAAAAAATAAAAGC AACGGTATTCAATTGTTTGAAGCAAAGGTATGCGATTTTGCCAGTAGAAATTGGGTGAGATACATAAGTATAAGTGAGATGGCAATGAAAGAATATTCTG GAGATGAGGGATTGGAACTGTTCGTGGAAGTTCGGGACAAATTCCTGGAGATGATAGAATACGCTGAAGTGTTTGAATGTGGGATACATGTGATAGTTGA AAAGACAGATTCATTTGAAGGGTCAGAGTGGGATCATGAGTCTGAAGTTGGAAGAGATAGAGTAATACCTGCACCGCCATATCTGTCTCAAAATGCGCTG TACAATTCCATTGAGATTGACGGCAAGCAAGGTCAGAGTAATTTATCAAAATATGCAGAGGATCGGCTTCTTGAGAGAATCTTCGATTATCATTATCTTA GACCCTTCGATTATTCGATGATTCCAAAATGTTTCCGCTACCGTGGAGAAGGATGTTCATTATCATTTCGTATACCTCTAGTTTTCGAAGGCTTGGTCAT TTGGGCTGTCTGTTCAGGTGGTGGGCGTCAAGAATTCAAGGCTATTATAAAAAATAAAAGCAACGGTATTCAATTGTTCGAAGCTACTCATGCAAGACCC TATTTCCGTAGTAGGTGGGTAAGATTCATAAGTAAACGTGAGATGGCAATGGAAAAATATTGTGGAGATGATGAATTGGAACTACATGTGATATTGAGGT CCAAAAAGAGTATAGTGGTACGATGTGGGATCCATGTGATAGAGGCATATCCATATGAACGGAGCATCTACGATCAAACTCCAGCGTTGGATCATGACAT TGACTACTACGAGACTTCATTTGAAGGGTCAGGGTTGGATCATGAGATTGACAACCAAGAGTCCGGAGTTGAAAGCGATAGAACGATACCTTCACCACCA TATCATCTGCTTCATCATCCCCGTCATGGTTCAATGAGATTTTCTACAAGGCAGCAGTGGAAAGCTTTTTTGATTCGGGCGTTCAGCCTATGGAAAATCA GAATCATTCAAAAATTGTCACCTAATGATCTCAATTAG
AA sequence Show only first row Show all	>Potri.007G143300.2 pacid=42766197 polypeptide=Potri.007G143300.2.p locus=Potri.007G143300 ID=Potri.007G143300.2.v4.1 annot-version=v4.1 MRKEKRKQSKDEENDSSSRKRRKADLTAMTEPDSSRSRPQWAYDVFLSFRGKDTRKTFTDHLYTALVQAGIHTFRDDDELPRGEEISQHLLEAIQESKIC IVVFSKGYASSRWCLDELVEILKCKYRKTGQIALPIFYDIDPSDVRKQTGSFAEAFVKHEERSEEKVKEWREALEEAGNLSGWNLKDMTNGHEAKFIQHI IKEVWNKLSPKDMNVGTHPVGIDPLVNEIRDFVSNGTEKVCIVGIHGMPGIGKTTIAKEVFDKLCDEFEGSSFLLNVKEKSESKDMVLLQKQLLHDILRQ NTEKINNVDRGKVLIKERLPHKRVLVVVDDVARPDQLLDLMGEPSWLGPGSRVIITTRDESLLLEADQRYQVQELNRDNSLQLFCRHAFRDTKPAKDYVE LSNDVVEYCGGLPLALKVLGSCLYGKNQARWESVIDRLRKFPNSEIQKKLRISFDTLDESTLKNTFLDIACFFIGRKKEYVAKVLEGRYGYNPEDDFGTL IERSLIKVDDSGTIGMHDLLRGMGREIVKEESPENPAQRSRIWSQEDAWIVLKMQMGTEVVKGLTLDVRRSEDKSLSTGSFTKMKLLKLLQINGVELTGS FERLSKVLTWICWLECPLEFLPSDFTLDYLVVIDMRYSNIRELWKEKKILNKLKILDLSYSKNLVKTPNMHSLNLEKLLLEGCSSLVEIHQCIGHSKSLV SLNISGCSQLQKLPECMGDIECFTELLADGINNEQFLSSVEHLRCVRKLSLRGHWDWNWNLPYWPSPNSSWIPAFLLTPTSTIWRLLGKLKLGYGLSERA TNSVDFGGLSSLEELDLSGNNFFSLPSGIGILSKLRLLTVQECRNLVSIPELPSNLEHLDAFGCQSMQWVRLTIQAKKNLNLDLFCCPDLIEIQGMEGLS NHGWIISQVTKSKLSNNYKKSLVEALCYGGYGYHILFNHCYTFSHRDKFTMIPNWFSYSGKGTSLSFHIPPVFQGLVVGVACQCLLGHFETAKLGIKNKS NGIQLFEAKVCDFASRNWVRYISISEMAMKEYSGDEGLELFVEVRDKFLEMIEYAEVFECGIHVIVEKTDSFEGSEWDHESEVGRDRVIPAPPYLSQNAL YNSIEIDGKQGQSNLSKYAEDRLLERIFDYHYLRPFDYSMIPKCFRYRGEGCSLSFRIPLVFEGLVIWAVCSGGGRQEFKAIIKNKSNGIQLFEATHARP YFRSRWVRFISKREMAMEKYCGDDELELHVILRSKKSIVVRCGIHVIEAYPYERSIYDQTPALDHDIDYYETSFEGSGLDHEIDNQESGVESDRTIPSPP YHLLHHPRHGSMRFSTRQQWKAFLIRAFSLWKIRIIQKLSPNDLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.007G143300 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G008868 [exp]	4.47	0.9181
AT5G36930			Disease resistance protein (TI...		Potri.006G282200 [exp]	6.92	0.9097
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	12.24	0.8825
					Potri.007G089400 [exp]	12.40	0.8828
AT5G17680			disease resistance protein (TI...		Potri.013G098000 [exp]	12.96	0.9013
AT1G49800			unknown protein		Potri.001G299800 [exp]	13.03	0.8292
AT5G36930			Disease resistance protein (TI...		Potri.011G008292 [exp]	17.54	0.8915
AT5G36930			Disease resistance protein (TI...		Potri.006G282300 [exp]	18.49	0.9024
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	19.87	0.8450
AT5G36930			Disease resistance protein (TI...		Potri.007G143200 [exp]	33.76	0.9067

Compare expression of checked genes

Potri.007G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.